BtaINT0064433 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66972994-66973247:+
Coord C1 exon
chr3:66972994-66973065
Coord A exon
chr3:66973066-66973189
Coord C2 exon
chr3:66973190-66973247
Length
124 bp
Sequences
Splice sites
5' ss Seq
CTGGTAATG
5' ss Score
5.67
3' ss Seq
TTGTTTGTTTTTAATTGTAGATA
3' ss Score
9.36
Exon sequences
Seq C1 exon
TAATTGGCAGAGGAGGTGAACAGATCTCACGCATACAACAGGAATCTGGATGTAAAATACAGATAGCTCCTG
Seq A exon
GTAATGTTATTCTCTTGCTGTAATTTTCAAAGTCACAAGAAAACTAGCATATTTAAAGTTGTTAGTGAAAATGATGCTGTTACTCTTTTCTTGGCCTAAGATTTTTGTTTGTTTTTAATTGTAG
Seq C2 exon
ATAGTGGTGGCCTTCCAGAAAGGTCTTGTATGTTAACTGGAACACCCGAGTCTGTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926:ENSBTAT00000011751:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.773 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTGGCAGAGGAGGTGAACA
R:
TGGACAGACTCGGGTGTTCC
Band lengths:
130-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]