GgaINT0039155 @ galGal4
Intron Retention
Gene
ENSGALG00000008939 | FUBP1
Description
far upstream element-binding protein 1 [Source:RefSeq peptide;Acc:NP_001006535]
Coordinates
chr8:17795256-17795618:+
Coord C1 exon
chr8:17795256-17795327
Coord A exon
chr8:17795328-17795560
Coord C2 exon
chr8:17795561-17795618
Length
233 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
ATTTTATTTTATAACCCTAGATA
3' ss Score
7.54
Exon sequences
Seq C1 exon
TCATCGGCAGAGGCGGAGAGCAGATCTCACGCATACAGCAAGAGTCAGGATGTAAAATACAGATTGCACCTG
Seq A exon
GTAACTATTTCTGGGTTTTTTTGTTTGTTTGTTTTTTGTCTGATTGCCTTCATCCATACCTTCATTTAAGGTACATTTTAATTCGTGTTCTAATCACGATTATCACAGTTTAAAGAAGCACAAAGTATTGTAATAGAACAAATTCTTTACTTCAGTGACCTTCCAATTGTTTGTGTATTATGTCTTCATCAACTCTTGCTGACTGCTAAACTGATTTTATTTTATAACCCTAG
Seq C2 exon
ATAGTGGGGGCCTGCCTGAAAGATCATGCATGCTAACTGGAACCCCAGAATCTGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008939:ENSGALT00000014525:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.480 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0001324=KH_1=FE(38.1=100)
A:
NA
C2:
PF0001324=KH_1=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]