MmuINT0088124 @ mm10
Intron Retention
Gene
ENSMUSG00000109764 | Klkb1
Description
kallikrein B, plasma 1 [Source:MGI Symbol;Acc:MGI:102849]
Coordinates
chr8:45289020-45294132:-
Coord C1 exon
chr8:45294074-45294132
Coord A exon
chr8:45289183-45294073
Coord C2 exon
chr8:45289020-45289182
Length
4891 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
AATCAACTTTTAAATCACAGGGT
3' ss Score
4.98
Exon sequences
Seq C1 exon
GATGATTTTATTCAACCGAGTGGGTTATTTTGTTTCCTTGTTTGCTACCGTCTCCTGTG
Seq A exon
GTAAGTATTAGTTTAAGGAGTTCAAATTAATAGTGTGTGAGAGAGGAATGGTCTTGCAATCTATACCACTCCTGGAGGAAGCCTTTAACTGTACAGCTTTGGGGGACAAGGCAGCTGTTGATACTCCAAGGCAAGAACTTAGATACATTACCCCAAACACAGATGAACAGGGGGAGGAACTTAGAGACATCACTGCACCTGTTAGCAGAAATATCTGTTTTGAGTTTACTCTTTAACAGAGCCTCTCCCACCCCCGCAGAGTTGTTTGTCTTTATAATATCAGCCTTCTAAATAAAAACTCTACCTGAAAATTGGAAATAATATCAGATATTGCATAATGATTTGAGTCTAATCCAGGTATCTGATTAGTATATAGTATTTTTAATATAAGACATACAGAGCCATTTCTAAACTGAAAGTACCTGCTTTGGGTTTCACAAGTATAGTATCCCTTTGGCAGTCTGGAGGGACAGCTTTCAACACTCGATGTCAGTGCTCTTTCCCTGTTTATTCCTTTGCTTTTCAGGATATGAGCATGGATGGCCCTGAACAGCCCCTCTCAACAGTCATTATAGAGGGAGATTTCCCTGGGTATAACATGTCAGGTGTATTCTGAGTCAAAGCTGACTTAGATATAGCCACACGCAAGGATTGTTTTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTGGTTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTACCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCTGGCAAGGATTGTTTTCTTGACTTTCAAGTATATGGCAAAGATAGGCTTGTCCTTGTAAGTAGAAGTCATTTCTCTAGGTAAGCTCTTTTTTCCCATCCCTCTCTGCTCCCTACATCTGGCCCATCATCTGTAACTGCTCTCCTGTACCATAACTACTGCCATGTTCAAACCAACTAAACACGAATAGTGATAACCAGAGATGCTATGGGCCATGGCTATAAAATTCATAATCATGACAGGAAAATGAGACATGGGAATACATATAATACTTGAAAACAAATACTTTATATAATCCTAAAGTACAAAATAATGATCGCCAATTTTTTCTTTAGTCTTTCATATTTTTCCGCATGAATCTATCTGTTGTATAAAGTGTTATTCATGAATAATAATTTTAATTAAAAATTATGAACACTAATGAAAAATAATTTTAACTTACCTTTGGTATTTATAGCTAATGTTAATGCAAATGAACATTTATGTTATTTGTTCTTCTTCATGGATATTTTGTAAGTATGGACATTCTCTGCACATATCCAATTATTTCTATAGATTAAATTTTTGGAAATAAAGATTTTAGATAGAGGAGTATGAATACCTTTGAAGGCTTTATAGCATGCATTATGGTATTAGCTTCTAGACAGGCATTCTCTGTTTGGTTTTCCCCACAAGCATGTGGAAGTGAATTAACAATACAATCTCTTAGAAATGAGATGTCAATATTAAATACGTTTTATGTTAAAAAATAAAATTTACAGGTTCACAACACTGGTTTAAACAGCTAGGTTAACAAAGATTAAATTTGAAACAATCAATATTTGTGCGCTGGCTTTGATCACAAATGAAAGAAAATCAAGCAGTACAGCTTTAATATAAATGAGTTTAAGAGTTCAGAAATCCATGTGCCCAGTGAATGGCTTCTGGAGTACTTAGACACTGCCCAATGATGGCACCCGCACATAGTGTGTCTGCATTGCTTTACTGCATTGTACGCTGCTGCCTTCATCTCAGGATGCACAATAGCAAGGCAGGACCAGCAGCCCAAGTCGCCTTGGAAACAAAAGTAAATCGGAGCCTTTTCCTAAGTCTGAGAACAAGCCTGTTACAGACTAGCTCTGGTCAGGTCATTGTACCAGCTCTGTGTGCAGTTCTGGCTCTGGTCTGATTGGCTGGAGCATCAACAGCAGAAGCATCACCTCCAGCAACATATGGACCACCACTTGTAGATGGTTCCTCAGGAGGAAATCTGGATGCCAATTCAGCAAGGTGGCTCTATGCCAGGCTACAAAGTAACAGATGCCTATTGGAGCTCACTGTTCTAAGTGGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCAAAAGGCTGCTAGCAGAATACTGAGTTCCAGGCAGATAGGATGAGGGTCTTATAGGCCACACCCACAGTGACACACCTACTCCTACAAGCACACCTACTCCCACAGGGCCACACCTTCTAATAGTGTCACTCCCTGAGATGAACACATACAAACCATCACAGTGCCCATTTGCTGCAAAGAGAGGCTTCGTTGATGTGGGACAGTCACTACAGTTATCTAGGGAAGGTGGTCATCTCACTGTTAGCAGCTTTCATATACTTACAGTTATTTACACTCCTTTGGTAAATTATCTTTTCATATCTGACATTGAATGTTTAAAACATTTTAGCATTTATCTATTTTTGTATCTATGTCTGCACACGCATGTGCACATATACACATGTGCTGTGGAGCACGTGTGGAGATGAAGGGGCATCTTGTGGAGGTCAAGAGGTCAATTTGAAAACTGAAGGGCCTCATTACAGGTTGTTTAGGTTAAATAAACTCTGTACAAATAATGCTGTTGTTATAATCATTACCACCACCTTCGTTATCATTGCTGCCGTTATCATTGCAACTGAGGAGGATAAGCAGTCCCACAGTTAGAATGTGTCTAGTCACTCTTTTTCATTGCCTGAGTCACATGTTAGTTTACCAACATTCAATTGCAGGATAGAAACTTCCAGGCTATCAGCGGATCACAGTTTGTGTTTGTGTTTGTGTACGTCTCTGTGCAATGGGATGGCAAGGGAGCCTCTGCTTGATAATTATGAGATGCTAACCACATAAAAAAACAAGTCTCTTTATAGCTATCCTCACCACTGGGCCTACTATTCAGTGCATTGTGCAAATGGGACACCTTAGGGTATACACTTGGGAACATATATTCCTAGGAGAATTTACCCAGGAATATCTGTTCTTTCCAAATATAAACCTGACTTAAGAGGTAGGCATGGTGACACCTCTCTGATAAGAAGAAAAACAATATTGCTAGGTTGGTTCATCCAAACTTGTCTCAGTGGCAGGATCCCCATATAGATAGAACATAGAAACTCTTACCTCTTTAGTGCTTATTAAAAGACATGTTGTCTAGACAACCATTCCTTGAAAAGTAAGGACAATGTGGGCAATGTTGCCACTGGAGTATTCCATAATTAATGAAAACCTGACTGGTGAAAACAGACAGGCTGCCTAAGGTGGAAAGCTAAGTACAAAGATTTGAACGGAATCTTTTCAGGGAGATCCCAGTTCTTCAATGGATTTAAAGAGCTGCTCTCTAATGATATGTGGGGTGCAGGATACCCACATGATGGAGTCAGCAGAAGCGATGTATCTCAGTTTATTTTCAAGTTAGCTTACTTTAATTTTTTTTTTAATTTGAAAGGTATTAGCCTTTTTTTCTGATTTATTGAAAATATTCTTTTCTCATGCCATATATCCTGATTATATATTTTCCTTCCCTCTACTCCTCCAAGTTCCTCCCCAGCTCCCATCTTCTCCCCATCCACTCCCTTTCTGCCTCTCATTAGATAAGAACAAGGTTTCTAAGAGACAACACCTATACAGAACAACATAAAATATAATAAGATGAAGCAAAAACCACCACAGCAAAGTTGGACAAGGCAAGTCAACAGAAGGAGAAGAGCCCCCAAGAGAAGGGACAAGAGTCAGAGACCCATTCAGGAGTGCCATGAAAATTCTCAGGGGAAGGCTACAAAATATACGTAGAGGACCCTGTGCAGATCTGTGTAGGCCCTGGTGCTTCAGTCTCTGTTTGCTCACAGGAGCCTTACTTAGTTGGTTCAGAGGACCTTGTTTTCTTGGTGTCCTCTGGCCCCTCTAGCTCTGAGACTCCTTCTGTCTCCTCTTTCACAGGGATGGATCTCTCAGCTCTGAGAGGAAGGATTTGATGAAGACATACCACTCAGAGCTGTGTGTCCTAAGGACTCTGACTCTCCCCTCTCCGTTCTCCTCTCTCTACTCTTCTCCCTCTCTCTCCCCTCTTCTCTTTCTTCTCTCCTCTCTCATCTCTCCTCCCTCCCCTCCCCACTCTGTAAAATGTCTGAGTGTGGGTTTCTGCAAATACATTTTCTTTATCAAGAAATGAGCAACAGAAAAACAGTACCCAATACTTATTATTTTGCTTAAATAAGGCTGGCTAAACATCAACATGCAACATTGCATGTTAGAAAAAGGGGACAGACAGGATTGAGAGTCAGAAAGAGTAAGTTTATGTCCCAGGATATCTATTCACTGTGTGATATTAGCCACATTTGAACTCTGAGACTCAGTTATTGACTTCTTTCATGAAAAAAGGGGGAAAAGAGAGGTGCAACTAATGGTCCTGACCTCAAGTTGCCCTCCAAGTGTTGTCCTAAAAAGCATTTTGAAAAAAATGCTGTATTTTCATTTCTAAGGTGAGATGTTTTCACAGCATGTTAGACAGCAGGCAGAAAAAAATTATACTGTATTTTAGTAGATAATTTATGTAAAAATTATTATATAGGTAATAAAAGAGTCAACTTCTATGCATAAATGTTCATAAGATGACTTTAAATAGCATGCTGTATTGTTTGACAGTTGTCAGACCCGTGAAGTTGTAATGACTATTAGGATAAATAAAACAGGAATGTCAAAACAGATGCATTTCTATTAAAATGGTTACACTTTCCCCCAAAATCAACTTTTAAATCACAG
Seq C2 exon
GGTGTATGACTCAACTGTATAAAAATACCTTCTTCAGAGGTGGGGATCTAGCTGCCATCTACACCCCAGATGCCCAGTACTGTCAGAAGATGTGCACTTTTCACCCCAGGTGCCTGCTGTTCAGCTTTCTCGCCGTGACTCCACCCAAAGAGACAAATAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000109764:ENSMUST00000026907:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PU(1.2=5.0)
A:
NA
C2:
PF0002421=PAN_1=FE(62.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types