MmuINT0088239 @ mm9
Intron Retention
Gene
ENSMUSG00000079298 | Klrb1b
Description
killer cell lectin-like receptor subfamily B member 1B [Source:MGI Symbol;Acc:MGI:107539]
Coordinates
chr6:128770960-128776333:-
Coord C1 exon
chr6:128776177-128776333
Coord A exon
chr6:128771059-128776176
Coord C2 exon
chr6:128770960-128771058
Length
5118 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TATCGTCTTTAACTTCTCAGACA
3' ss Score
7.54
Exon sequences
Seq C1 exon
TCATTTCACCTCACAGGACTCAAAGTTTGTCCCTGTTCACGAGGCCGGTGTCAAGTCCCTCCATCTACAATGGATTCAACAACACTGGTCTATGCAGATTTAAACCTAGCCAGGATCCAAGAACCTAAGCATGATTCACCTCCATCTCTTTCCCCAG
Seq A exon
GTAAGCAGCTTGCTTCTGGCATTTGAATTATCTTCCAGAGTTAAGATTATCCTCCAAAACTTATGGGTGTAAGTCATTGATTTAAAGGTGACAAGCAGGTATATGTTAGAGTTAAATAGTATAGCTATCCTGCCTGCAGAAAACCACAGTTCTACAAATGCCATAGAGTCCATTTTTACTCGTGTAGTCAGAAGGAAATCCGAACATTACTTCTCCTATTCTGCCTTTGCTAAGAATTCTAAGAAAGAATATTTTACTCCCATGAGCCAAGGGGTGGTTTAAGAGATACTTGCTGCATTCCATTGCTAATTCCAAATTCGTCTACAGAACATGGACACTACGATCCCGTTCTACCTTGGTGGCAACCCCAGCTCTCCCTTCACAGTGAAGTGTGTAGACGTCATTGTTAATGTCTTTGTCGCCTGAAAAGGAAGACATTCGTTGTGGGGAAAGTCATAGTAAAAATGAAAGGTCTGAATTAAATTAAAAGCCAGTAATTTTTATATATTAAAATTTATTCAATTTGTTAAAAAGCTGGTTCTTTCTCTCTTGCAAAGTATAACAGCTATAAGTGGAGGAACCACAAGTTACCTGAGCCAGTTGGGAATTAATCTTTCAATGCTGGCCAAAAGTAGCACTCTTGTCCACCAGAGGATTTAATGATTCTAGCAAAAGAAATGTGGAAGTCTACCAAGAGGTGAAGTATGTGACATAAGGATGGCTGAGATGTAAGAGAACAGAAACTCAGGTAGAGAGTGTATAAAATAATCATGAAAACAAAATTCTAGTCTGCTGTCTAACTGAACACAGGGCAGTTGTTTTCCAATATGATGTTCTCTATGTGTTGTAACATGTGGACTTCCAACTTTAGTGGTTCTTGTTAGAAACTATTAAATTGTCAAAGGTTTGAGTCAAGGAGAAAGTCTCAGAGTCACCAAATAAATTTCATTATAATGTTTACGTAAGGGTCAGTGGAGAGTGGAAGAGGGCCTGGTAGATAACTCCACGGGGAGTGATGGTGTCAGCTATTTTGTGTTGGGAAAAAGCAAGTCTTTGTTTTCCCATCATGCCTAACAAAAGTGGAGAAAAGACCTTGTTGAAAATGGTATAAGAAAACCAGCAAGATTCTGCTGAAAAGACCCTGATATAGCTGTCTCTTAGGAGGCTATGCTGGTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGCATGGAACACAGGGCCCCCAATGTAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGGTCTGCAATCCTATAGGTGGAACAACAATATGAACTAACCAGTCCCCCCAGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCGGCCATCACTAGAAAGAGAGGCCCATTGGTCATGTAAACTTTATATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGAAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGGATAGCATTTGAAATGTAAAATAAGAAAATACCTAATAAAAAAAGAAGACTAATATAGAGAAAAATAATAATGCTTTCCTCAAATCCTACTGTCTATGATCCCAAATCAAGAAAACTAGAGGGCTGTCGAGATGTTTCAGCGGTAAAGGCTAGGCTCACAACCAAATTCATAAAAAGTGTCTAGGAAGTCTTTAAAACAGATAAAAAGAAGTAATCATTATCCTAAAGGTTACTAATCTGGAAATAAACCTGAAGAAAAGAAACAAATAACTAGAATAAAAATAATGTTTGAGCATAATATTTGAAGAGAAAATGCTGACGCACTGGCATAGTAACTGTGAAACCGCCAAGACCTGTTAGCTAAAGGACTCAAACTGTGGTAAGCTCGAAGCACCACGATTAGATCTGCCAGCAAAAAGGACCGGAAAGGGGGACGGGGGCAGTGACCTAGTTTCTTTGTGGTTAAATGACCAAAGGTCTGTTTTGATAGTACAATGGGTAAAATAGGTACGAACGCCCCTGGAGTTTGTTCATTCATTCAGAGATAACTAATTACTATAAGATAAATAATGCTCTGGACATTGGGGAAATAGCCATGAAGAAACAGGAAAACATCTTTCTCCCTGTGGATTTTATATTATTGTGAAGTTTAAAATCAGTGATATAAATACTTGCATCAACAACTTTGAGATGTTGAATGCCAACAAGAAAAGCATCTAGGTGGAACTTGAGAGTTTTGTCTTGAGAGACAGCATCATGTCAAACAGAGTCATCAAGGCAGGCCTTTTAGGGAGATGATGCTGGAGTCCAGCGCTCAAAGATGCTGGGGACCAAGGCTCAGTGTCTGAGAGATGAGTCTTCTAGGAAGCTGGACCTGCGAATGCAAAGGGAGAACATGCCTGTGGTGTTGCAGGGGAACACACATGCCTGGTATGTTTTAGAGATCAAGTCAGGAGGAACGGTGACAGGTGGGAAGGGACTTGGAGGGAATTCCATGGGTGCAGATGTTGAGGGGGAAGCCATTGGAATGCCTAGAACAGTGGAGATGACTTAGCATTGCATGAATATCAAAGAAGAGCTCCATGCAGGCTCTGCCACATAACCAGTGCTCACATAGCTCCTTCGGTATATAAGTTCAATAGTAAAACAAGATAGTACAGGGAACCCAACTCTGAGAAGTAGAGTTCTTTAAATTTTGTCATGGATGGGTTAAAAAAAAATTAAGTCACTCAAGTTACTTTTTACCTATAATTAAAACAAAACAAAAACCCTTGCTTTTTAGAAAAAATAAGAAAATGATATTTGTTAGCAGTTACTGAAGGCCAGATGCTATGCTCAGGAATTTAGAATTATTGCATACAGTCCTCTCTAGAACATTCTATAGCAGATATTGCCCACATCTTATAAATAAGAACATTCATGGGTTATAAAACTATTATGGGCCTTGGGGCTTTGGAGTCTCTTCTGGTGTCCTTCCAACCAGGACACAGAAGCACTGGTGACCCACTGGCCACACCCTCAAACCCAACACAGTGGCTGCTTCCATCCATGACTGTCCCATATCACCTCTCACTGTGATACAACAGTTCTCACTATCCACAAAAGATTGCTTCCAACCTGCACATATGCTGGTCTCTTACATATAATGTAGCACTTACAAGTAACCTGCTTGCATGTGACTGTGTGCTTCAGATAATCTGTAGATTACTTTCAGCCCATTTCAAAGCCATAGGAACAGCTGGCGTGGTGTTTTTGTTTAGAGAACAACGATGGAGAAAGGGTGTGTGTGTTCAACACAAATGCAGCTTTTCACATGTAATTATCTACAGTCTGTACTTTGTTGGGTCTACAATTATGGCTACAAGCATAAGTTAGACTGTCTTTTGTCTCTTCCAGGACATTTTTTTTCTCCCTTGCCAACCTTTCCTCTTATCCTTTCTCTAAAGGAATATTTTAAAAGGAACTAACTTGCTTCAGTGGATGTCATATCTCAATTCTGATCTAGAGACTAGAGACAACTGGTGTTTGTCTTCAACTGGATCAAGCAATTCAGTTGCTATGGATAATGTTAAAAAAAAAAACAATACAGAGAGAAAGTAGAGATGGGTATAAAGGCAATTCTTGAAATTACAATGCAAATAAAGTATAGCCCATCTGATTTTTATTAATAAGAGTTAACTCAAAACATATATTTATTATATTAAGAAATACTTAGAAAATTATATATATCATACATCAAATGGTGCTGTACAGAAGTAAGGACCTTAGCCAGGTATGTGGTTCATACCTATGATACCAGAACCTGAGAGATGGAGGCAGAAGTTCAAGGCCACTCTTAGCCACATGGAGAGCTAGAGGCCAACCTGGACAAAAAGAGAAGGAAGAGCAACTGAAAGTCAACTAGGAAAGCTTTTTTAGATAGAGTTCATTAAACCATTGTGATTGTAAATGTGAATAATACAGGCCAAAGGAGAGCAGTGGGGAAGTATAATAGTTACAGGCATAGGAGCTAACTAGTATTTCTCCATAGTATTTTCATAAATTAAACTATTGTTTTTGTTTCCCATATGACACCCATACTTTCAAGGTTGTCTTAAATCAAAATTAGTTGACCAAATCATGATACTTTATGAACACGTTTCATAACTTGATGTACCCCAACTTCTTATAAACATGAGAACTCATTGTATAGTAATTGATATGGTCACCAAGAGAAGCAAAGATATTGGGGCCAGTCATTCATCAATGTAGCATTGTAGATGTAGGCATGTGTTACATAAACCACAGTACCCCCTTTGTCTGCCATTTTAATTTCTGCACTTTCATAACCTGTAGTCAACAACAGTTGATAAATATTAAGTGGAAAATTTCAGAATAAGTAACTCTGTGTTTTAAGTTGGACATTGTTTTTGAAAAGCACAATGAGATGTCACACAATCGTGGTCAAGACATGAGTCGCTCCTCACCACCTGCCAGTCACCCAGGTTGGTGGCTCAAAAAACTGTCATTTTACTGAATAGTGGCCTCAAACTGAGAGCACTTTAAATGCTAGCAACCCTGTTGTGTCAAAGAGAGGTGGCCATAGGACTCTTCCCTTATATGAAAAGTTGAAAAACTCTATTTAAGGAAAGGAAAGGAAAAAAAAAAGATTTTTTCACTAAATGTCAAGCTGTAAAAGTTATAGCCACAGTATGCATATGCATGTGCTTAGTTAAGATGGAGAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTTCTATAAATGAAGAGCCTCCTTCTTGGCGGAAATGCTGGCTCCTATCCACAATAGAACTTATTTTTGTAAAGTCCTCCCTCAGCAGTTTTCAGAACATCTTCCTCATCGGTCAAGTTCGTCCCTCCTCACGCCCCTTTCACATGAAACATGTACGAGTAGTCAAGTAGTCCTATGTTATCAGAGAAAACACTGTTTGACCCGACTCATCTTGAAGAACTGTACAGTAAGCTGGCTGAGAAAGGTTCTTTTCTGCACCCCACCCCACCCCCAATTTGAATCCATGTTAATCACCTCTGACTTTCATTCCAAATGCACTCAAGTAGATTAAACGTGTATCGTCTTTAACTTCTCAG
Seq C2 exon
ACACCTGTCGGTGCCCTCGCTGGCATCGGTTGGCTCTGAAATTTGGCTGTGCTGGCCTCATCCTTCTTGTGCTGGTCGTGATTGGACTCTGTGTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079298-Klrb1b:NM_030599:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0309410=Mlo=PU(14.6=41.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: