MmuINT0088241 @ mm10
Intron Retention
Gene
ENSMUSG00000079298 | Klrb1b
Description
killer cell lectin-like receptor subfamily B member 1B [Source:MGI Symbol;Acc:MGI:107539]
Coordinates
chr6:128818913-128820336:-
Coord C1 exon
chr6:128820265-128820336
Coord A exon
chr6:128819068-128820264
Coord C2 exon
chr6:128818913-128819067
Length
1197 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
ATGTCTTTCTCTTGCTTCAGGTT
3' ss Score
11.39
Exon sequences
Seq C1 exon
TGCTATCAGTACAAAAATCATCAGTACAAAAAATCTGCGCGGATGTTCAAGAGAACAGAACACATACAACAG
Seq A exon
GTAAATTTGACATTCTAGTCTTTGATCACTATCATGACACTTTTAGGCAAGCTCACACCATTGTGAGTCTTATGTTTGAGAAAACAGAAGCGTGAAAAAGTTAAGACCTTGTCAAAAGTCATGTGACCTGTAGATGATGGTGCAGGACACTTCACTGAAGCTATGTGACCTTGAGATCTAGCATCTTAGCTACCTGGCCATGCTTCCTCAGACTGCAAGCCCAGTTGGTCACTAATAGACAAATATCAAGCTAAAAAGTAAAGTATGGGGGCTTAAGAGACAGCACAGTGGTTAAGAGTGCTTGTGTGTAAGTGTGTAAGCAATATAACCCCAGCATCTATGTGATAAACACCCCAGCCCTGCAGTGGGTAGAGACAGGATGGTCACTGAGGCCTGCTGGCTTTCAGCTTTGCAGAAAAACCATTAGCATCATGTTGAAGGAAAGGTCTGCTTCTAAAGGATAGGTGAGGAGGGAGAAAGGGGGAGATGTTACATTCTTCTCTGGCCTCTTCATGTACATAGGAGTCTGTACTTGCACACACGTGCACATGAACCACACACATAAAAAAATAGAATATGCTTTAGAGAAATGCTTTAGACTCAGTGTTAGATTATTACTGTGGGGAGACAACATGGCCACAGCAACTCTTATAAAGAAAAGCATTTAGGTGGGCTTTGCTTACACTTTCTGATGCTTAAGTCCATGCCATCATGGTGGGGAGCATGGCAGCATACAGGCAGACATGATCCTAGAGAAGCAGCTGAGAGTTCTATATCTGGATCTGCAGGGAGCAGGAAGAGAGGACACTGAACCTGGTTTGGGCTTCTGAAATCTCAAAGCCCAGCCCCCATGAACACTTCCTTCAATGGGACTATACCTCCAAAAGTAGTGCCACTCTCTGTTGACTAAGCACTCAAATATATGAGTCTGGGGAGGGAGGGGCTATTTTTATTCAAACTACCACAAGAAATACTTGATTGTTTTAATAAATTTGTCAGATAGTTAACTTTATCTGAAGTTAATTAATAGAAACAAAAATAAAGTCTTTGATATTTATACATATTAAATATGTCATAACAGCAATCTTGTTCCTGTACATATTGATAAAAGTGTTAGTTAGTAAACACTACTGTGTATAATCAGCTGTGTACAGCAAGAACAGGGTAGAAATACACCATGTCTTTCTCTTGCTTCAG
Seq C2 exon
GTTGTTCAGCTAAGCTAGAGTGCCCACAAGACTGGCTTTCACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGAAGGAATGTCGAATTGATTGTGATAAAAAAGGAGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079298:ENSMUST00000032472:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(0.1=0.0)
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAATCTGCGCGGATGTTCA
R:
AGTTCTTCTTGGTCTTGAATGAGCA
Band lengths:
198-1395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types