MmuINT0088244 @ mm10
Intron Retention
Gene
ENSMUSG00000030325 | Klrb1c
Description
killer cell lectin-like receptor subfamily B member 1C [Source:MGI Symbol;Acc:MGI:107538]
Coordinates
chr6:128784105-128784811:-
Coord C1 exon
chr6:128784737-128784811
Coord A exon
chr6:128784260-128784736
Coord C2 exon
chr6:128784105-128784259
Length
477 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATGTCTTCCTCTCACTTCAGATT
3' ss Score
10.73
Exon sequences
Seq C1 exon
TGCGAGTCTTAGTACAAAAACCATCAAGAGAAAAATGCTGTGTGTTTATTCAAGAGAACCTGAATAAAACAACAG
Seq A exon
GTAATTTTTTGTGCCTTGTATTTTGCAAGAATAATAGCTGATGTTTGCTATTTACCAGGGATTACGGTCAGCCAAGGCTTACAACAACCATCTCTGAAGATGCTATATCACCATATCTTATGTTAGAGGAAATTGCTGCATAGAAACTTGTTGAGGGTCTCATGGTTGGTAGTTAATAAGGCTGGTAACTTCTTTGAAACTATGTGACCTGGAAGCCTGAGATCGCAATCACTTGGCCATACTGCCTAGGGATGCTAGTACACTTGATCATTAACTTAAGAAAACGCTGTGTCAGTTAACTTTGTCTACAGTAGAAAAAAGTATTCCTTGTTATTTATATTTCTTTGATGTGTCATAACAGTAATCTTGCTCCTGCACATGTTAATAAAAGTGTGGGTTAGTAAAAACTACTGTGTGTAACCAGCTGTGGTGAAGCAAGAACAGGGTAGAATACACCATGTCTTCCTCTCACTTCAG
Seq C2 exon
ATTGTTCAGTTAATTTAGAGTGCCCACAAGACTGGCTTTTACACCGAGATAAGTGCTTTCACGTTTCTCAAGTTTCCAACACTTGGGAGGAAGGTCAAGCTGACTGTGGTAGAAAAGGAGCCACTTTGCTGCTCATTCAAGACCAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030325:ENSMUST00000174404:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=55.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGAGTCTTAGTACAAAAACCA
R:
CAGTTCTTCTTGGTCTTGAATGAGC
Band lengths:
230-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types