MmuINT0088249 @ mm9
Intron Retention
Gene
ENSMUSG00000030154 | Klrb1f
Description
killer cell lectin-like receptor subfamily B member 1F [Source:MGI Symbol;Acc:MGI:2442965]
Coordinates
chr6:129003201-129003884:+
Coord C1 exon
chr6:129003201-129003275
Coord A exon
chr6:129003276-129003729
Coord C2 exon
chr6:129003730-129003884
Length
454 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
ATGTCCTCTCTCTTCTCTAGGAA
3' ss Score
12.99
Exon sequences
Seq C1 exon
TGAGATTCCTAGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGCTCAAGAGAACAGGACTGAACTAACAG
Seq A exon
GTAATTGTGTGGCTTGAATTTCCTGAGGATAATAGGTAGCAGAAAATTGTGAGTTATCTCAGTCAAAGTTCACAACAGTCCTTGATGAAGACACCATATTGCCATGGTTTTGTCTGAGAAGGCAGCCATACTTTTAAGAACTCATGGAGAGTCACACAGTTTGTAAATGTTGGTCCTGCTGCCTGCTGGTGCTGGTGGTGCACATGAGCACTCATAGGCAGATATCAAGTTAAAAAGTGGAATACTAGTGAATATGTTAAACAGGTTACTTTGTTTGATGTTAATTAATATAAACAAAATATAAAATGAATCCTTTGTCATTAATTATGATTCCCTGATATATGACAGCATTAGTTAGGTTCCCACACACACTAATGAAGTACCTACTGTGTGTAGTTGATTGTGATATACCATAAACAGGGCAGAAATAGAACATGTCCTCTCTCTTCTCTAG
Seq C2 exon
GAAGATCAGCCATACTAGAGTGCCCGAGATATTGGCATCCACACTGGAACAAATGTTTATTTGTTTCTCAAATTTCCAGACCTTGGGCAGAAGGTCGAGATGCCTGCTCTATGGAAGACGCCATTTTGTTGCTCATTGAAAATAAAGAAGAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030154-Klrb1f:NM_153094:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005916=Lectin_C=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATTCCTAGTGCAAAAACCACCA
R:
TTTCAATGAGCAACAAAATGGCGT
Band lengths:
214-668
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: