MmuINT0088276 @ mm9
Intron Retention
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129534164-129535845:+
Coord C1 exon
chr6:129534164-129534264
Coord A exon
chr6:129534265-129535600
Coord C2 exon
chr6:129535601-129535845
Length
1336 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TGGAATTTCTTTCATTTTAGGTT
3' ss Score
10.51
Exon sequences
Seq C1 exon
AATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTATAATGAAACTCGCAGACAGTGGCTGTGGGAAGACCATTCGGTTCTACCCTCTGGGCT
Seq A exon
GTAAGTAGTCATGTGGCCTCAGGTGTTTAGAAAGCAGTCCTCAGGCAGATGAAAATTATCTTCACACTCTGTCTGCTGCAGGCAGGACAAGGAAAATTGATGGACAGAGACCCTGAGATACCACTCTGGGGGTGGGGAAGTACAGTTTGTGGTGCAGGACAGCTGGCCTCTTGGGACTGCAAGGAAGCAGGGCTCATATGGTTCTCAGGCTATTGGACACGCGGGTGCCATAGAGAGCTGTGGAGGAGCTGAGAACAGAGTGGAGCCCCACGGGCTCGAACCAGCCCAGGGCCAGGGGAGAAGGGGGGAGCTCTGGCTGGTCCTGCCTGGAAAGTCCTTGGCCCGACAATGGCGGTGGGCTTGGGCTTGGCTTGAGCATGGTGGTCGCAGTGGTTGGGAGTGCAGACAGGACTTTTACAGGAGATTAGATAGTGGCTCTGTAGGCAACGGCTTTCTCCAATGGCACTGACACTCTCTTTCCTGATTTGGATTAACCAACTATCAGTTTAAACAGTTTCTTTCTCCTCCCACCTCCCTACCCCAACCCCTACCTACTCAGGAAATGATGGCTTTAACTAGCAACTCTTTTATTTGGCTGATGATAAGTTAGAACACCTTTATTTAGCATAAATTCCTTTAATTCTAGGGTTCAGGAGCAACCTCCTTAGTTCAGTGTTCTGTCCCCTGTTCTGTCAAATCAATGGCTGCATTATAAAAGATCTAACGTCGCCTGTAATATGTCATTACTATCCTCCTGGTCTTTAATATTGCACTTACCATGAGACCAAATAACTGTGGTGTGTAAATGCATATTTAGGCGAGTAAGTCACAATTTGTTTTGCTCTATTTTATTTTTTAGTGTTTTACTGTGGTGTCATGGACCTAATGGCCTTGATCTTGTTAATATCATACTCCTCTGCTGAGCTACACCTCTCAGCCCTACTCACAGTCTTTCTTTCTTTCTTTCCCTCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTGTCTGTTTGTCTTTCTTTCTCTCTTTCTTTCCTTTTGAATTTGTCTTTTTCTACCCTAACAACCAATTGACATCCTTTGCCCTTAGACTCTTCCTTAGTTGAAATATTAATTGACATTTACAATTACACACTGACTTGATAACTTTGTGGTTTGCTACCATATTACTGATAAGAATTACGGGTTATGGAAATCCAATGGATTGGATTTTTGACATTTATATGTAGGGCAACAGTATTGTATTTTCTTAGGTGTTTGAATGCGATATAATTTTGCAATAACTGGAATTTCTTTCATTTTAG
Seq C2 exon
GTTTTCTAAACTTGAAGCTAATATGAAAAACTTCTGTGCATCTTATAAATCAAAAGAAGCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAGCATATTTAATTCTATGAGTTCATGAAATATATGAAAATTAATCTTTTTTAACATTTTTTCCTGGAGTGCTTATTTTATGAAGAAAATGTGACAAATATTTGCCTTTGCTTAAATAAAACTGTATTCAAATATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241-Klre1:NM_153590:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTGAAGTCTTTCTTTTGGGTTGG
R:
ACAGTTTTATTTAAGCAAAGGCAAAT
Band lengths:
326-1662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: