MmuEX0025831 @ mm9
Exon Skipping
Gene
ENSMUSG00000050241 | Klre1
Description
killer cell lectin-like receptor family E member 1 [Source:MGI Symbol;Acc:MGI:2662547]
Coordinates
chr6:129533107-129535842:+
Coord C1 exon
chr6:129533107-129533252
Coord A exon
chr6:129534164-129534264
Coord C2 exon
chr6:129535601-129535842
Length
101 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTTTCTCACTTTCAGAAT
3' ss Score
12.49
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCTCCATCATCCCTGTCCAGAGAACTGGGTCTGGTTCAGGTGCAGCTGTTATTTCTTCTCCAAGGAAGAGCTAATTTGGAGAGACAGTCAGCGTGCCTGCTTGTCTCTTAACTCCAGTCTCATAAGGATGAACAAAGAGGAAATG
Seq A exon
AATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTATAATGAAACTCGCAGACAGTGGCTGTGGGAAGACCATTCGGTTCTACCCTCTGGGCT
Seq C2 exon
GTTTTCTAAACTTGAAGCTAATATGAAAAACTTCTGTGCATCTTATAAATCAAAAGAAGCTTATATGGAAGAAAACTGTGCGAACAAACTGACATATATTTGCAAGAAGTAGCATATTTAATTCTATGAGTTCATGAAATATATGAAAATTAATCTTTTTTAACATTTTTTCCTGGAGTGCTTATTTTATGAAGAAAATGTGACAAATATTTGCCTTTGCTTAAATAAAACTGTATTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050241_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.8=53.1)
A:
PF0005916=Lectin_C=FE(34.0=100)
C2:
PF0005916=Lectin_C=PD(37.1=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCATCATCCCTGTCCAGA
R:
ATATGTCAGTTTGTTCGCACAGT
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: