BtaEX0001017 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1B977]
Coordinates
chr5:100183940-100188787:-
Coord C1 exon
chr5:100188642-100188787
Coord A exon
chr5:100185438-100185538
Coord C2 exon
chr5:100183940-100184048
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTGTTTATCACTAGCAT
3' ss Score
5.92
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CTCAGTGTCATTCTTGTCCAGAGAATTGGGTTTGGTTCAGATGCAGCTGTTACTACTTTTCCAAGGGAATGTTAACTTGGATAGAGAGTCAAAGTGCCTGCTCATCTCTAAATTCCAGTCTCATCAAGATAAACAAGGAGGAGATG
Seq A exon
CATTTCTTCTCCTTAAAGTCTTTCTTTTGGATTGGAGTCTACTATAATGAAACTGGCAGGCACTGGCTGTGGGAAAATGATTCACTTCTGCCTTATGATAT
Seq C2 exon
GTTTTCTCTTCCTACACCTGTATTAAGACATAACTGTCTATCTTACAAATCAAGAGAAGTTTATCTAAGTGAAAGCTGTGAAATTAAACAGACTTACATTTGTAAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030426_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF054737=Herpes_UL45=FE(33.8=100),PF148621=Defensin_big=PD(48.7=75.5)
A:
PF0005916=Lectin_C=FE(34.0=100)
C2:
PF0005916=Lectin_C=FE(37.1=100)
Main Skipping Isoform:
ENSBTAT00000042959fB180
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTGTCATTCTTGTCCAGAGA
R:
TGTAAGTCTGTTTAATTTCACAGCT
Band lengths:
243-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development