RnoEX6015313 @ rn6
Exon Skipping
Gene
ENSRNOG00000058714 | Klre1
Description
killer cell lectin-like receptor, family E, member 1 [Source:RGD Symbol;Acc:727903]
Coordinates
chr4:163352778-163354976:+
Coord C1 exon
chr4:163352778-163352923
Coord A exon
chr4:163353833-163353933
Coord C2 exon
chr4:163354810-163354976
Length
101 bp
Sequences
Splice sites
3' ss Seq
CGTTGTTTTCTCACTTTTAGGAT
3' ss Score
13.13
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GACTCCATCATCCCTGCCCAGAGAACTGGGTTTGGTTCAGGTGCAGCTGTTACTACTTCTCCAAGGAAAAGCTAGTTTGGAGAGAGAGTCAGCGTGCCTGCTTGTCCTTCAATTCTAGTCTCATAAGGATGAACAAAGAGGAGATG
Seq A exon
GATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTACGATGAAACCAGCAAACAGTGGCTGTGGGACGACCATTCAGTTCTACCCAGTGGGAT
Seq C2 exon
GTTTTCTGGTCTTGAATCTAGTCCGAAAAACTTCTGTGCATCTTATAAATCAAAAGAAGCCTATTTGGCAGAAAACTGTTCAACCAAACTAATGTACATTTGCAAGAAGTAGCATATATAATCCTATAAGTTCATAAAAGATATGAAAATTAAAGTCTTAATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058714-'7-9,'7-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=PU(26.8=53.1)
A:
PF0005916=Lectin_C=FE(34.0=100)
C2:
PF0005916=Lectin_C=PD(37.1=94.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCATCCCTGCCCAGAGAACT
R:
TGCTACTTCTTGCAAATGTACATT
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]