MmuINT0089653 @ mm10
Intron Retention
Gene
ENSMUSG00000002900 | Lamb1
Description
laminin B1 [Source:MGI Symbol;Acc:MGI:96743]
Coordinates
chr12:31278736-31282759:+
Coord C1 exon
chr12:31278736-31278799
Coord A exon
chr12:31278800-31282556
Coord C2 exon
chr12:31282557-31282759
Length
3757 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
CCTCTTGGTGACCTCTGTAGATC
3' ss Score
6.88
Exon sequences
Seq C1 exon
GTAATATTTCGTGCTTTAGATCCTGCTTTCAAAATTGAAGACCCTTATAGTCCAAGGATACAGA
Seq A exon
GTGAGTTTGTTTTGAAATACATGCTTTGGTGGGAAACAGTACTTACGGAGGGTCTCATCCTACCCAGTGCTGTGTGGCCCGATATCTTGATACTCAGTCCTACATACACCTAGATCTTCTTCCTTTCTTTGTGGTCTTCCAAAAAAAAAAACCCACTTCAAATTACCAGTAATCAGGCTTCACTGATAAGAAACACATTTTGACTATGTCAGCAGAACTCCAAAAATCAGACTGACCATGCCACCTTCTGTTTTTGATGCTCAGTATATAAATTAGAGTACAGATTAAACTGCTGTAATCAAACACCCCCTAAATATAGCTTCTGGAATAAAATAGATGTTTCTTTTGCTTGTATGAAGTCAGCATGAGGGATGTTTAATTGTATGTCTGTGGGTATTTTACCTGTATGTATGCGTACCATGTTCATGCCTCATGCTCTCGTAGGCCAGAGGAGGGCATCTGATCCCCTGGACATTGGAATTATAGAGAGTTGTGAGCCACTGTGTAGCCTGGAAATCAAACCCAGGTCCTCTGGAAGAGTGGCCAGTGCTTTTAACCACTTAGCCATCTCTCCAGCACTTGGAAGGATTCTCAAAGAAGAACTACAGCTCAGTTGCCATAGTTAGTCGCACTGTATAAAATACAAGATGCTATCCAGTTAGATTTGAGTGACAGATGAATAACATGTTCTTTTTTAGTACCCTTGTAACATTTTAACTGGCACAAGTATACCCCATCTAGTATTTATGGTTTTATGGTTAGTATGATTTTTTTTTATTGTATGCTATTTAGGACTGACACTAAAACTGAGGGTTTATCATTAATTCTGTTTAATTGAGCATCCTTTATTACTTACTGAATCCGACAGTCCTAGCTATGAAACTCTACCTCTTCCTAGGATTGTCTACACTAGCAGAATTACCACACTGTCGCTGCCCTAATTCTGATCTGTAGCGGTCAAGAATAAAGATAAGGCTTGGAGGTTGTCATATCACTTCTGTGCATTGCTATAATTAGTCTCCTAGCTAGAGAACAGAAGATACTTGGGAAATATCTCTGGCAAGATGGCCTGTGCTCTGCTAAAACTCTTGGCAAGAGCTCTTATCCACAGGCGATGGGAAACAACCAATACTGAGAAAAATCCGAAGTGCCATCGTGACAAGGAGATGTAGCAAGGTGAGGCCCATGTAGGCTTTTGATGGGTGAGAACACCGAGTGCAGAGTCGTGCATACCAGGTGATGGGGCAGTGAAATGGCAGGTGATTCTGGAGCTCATCTGATACAGTTCTTAGTTCAGGGGCTGGAGAGATGGCTCAGCCCTTGAAGGCTAGGCTCACAACAGTTCTTAGTTCAGTGCTCTCTTTGCTGTTCAACAGTTGCTTGTTACTGCAGGACTACTTGTAAATAAATCTCAGGAAGCAGAAGCAAGCTCAATGGCTTTCAAGTCAGACCAAGTTTAAACTGGGACTCTTGTCATAATGTAGCTCCATGACCTGGTGACTTAAAACTTTTCCATTCCCTCTTCCCCCATCTTGACCTGGAGACAGAAATACCAACCTGAGGGTTGCTTGAAGGAAAACAGGTCGTATAAACGAGCAGCCCAGTGTGCAATTGGGTGAAGCTCTGGGTACTGGTGATGTTGACTCTGCCAACAGCTACAGCTTAGGGCTTGCATTGAGACTGTCCTGTCAGAGTGAAAGCCATAGTGTCAGGGTGCCGGAGGGAGCTAGCCTCCCTTGTTCGGCCTTGCTATGAGGTTGCAATCAGTCCGAGTAGAGACACGTCTGGTTTTTGTTGGTCTTTGTCGGCTGTGTGCAGCCCTATTTTTAACCAAGGTCTCATGGAACTTCCACACTTGCAACATGGGAGATAAAAGTAGAAGAAAACCCAGGGGATGTTTACAGAGAACAACTTACATTAATTTTAGTGTGGCCCAAACTATTCAGGGTCTATAGTTCATTCATTCATTCTGTTGTAAAAACAATTTTTAATGGCATGTCTCTGCCGACTCTGAACAAGCCACGAGGCTGTTTCTGTAGGTCTCAAAAACTGGTAGTGAAAGATACCCACATTGGCTCCAGGACAAATGGCACTGGAGTCCCTCACAGGGCTCACCTGCTCTGCAGGTGAAGTGTGTGGTACCAGGAATGTATTCAGTTCATGGCCTTACATTTCCCTGGCTTTTGTTGTTTGGTGGCATCTGGAGACCTGTTTCTAGGAACTGCCCATGTTAGCTGATCACGCCTTTGATTTACTTAGTAATCAAGGGAACAGAATTTCTATGGCTGGGACCTTGGAGACTCACTTCAAAGGGATGTGCCTCTTAGAAGAGCAGGCAGCCTGAGGCTCTGTTGTTGCTCCTTATGTCGGGAGAGAGTGGGGAGCTCTTTGCTCCTTGGAGGACTCTATGAAGTTCAAGGGTTTCCAAATACTCCAGCTGCCCTCCACGTTTGTTTTGCAGCCTCTAGTCAATAGTACTCTCTGTGCCGGAGAGGTTTGCAGATGTTGCTGTGACAGCTGCCATTCAGAGCAAGATTGTGGGTTCTTTGTTTTGTATTTGATTTTTACAAAGAGCCTAAGTTTAATGCATGGACTCTCCCTTTCCAGCCCCAGCCATTTCTATAGTCTTCATTGTAAACTGTGCACGTGTTAGAACTGTTTGACGTGTTCATTTGGCGTCTGAAACAACCTGACGTACTGGGCTGCTCCCGTTCTGCCTTGTATCCTAAGCTGACAATATGCATTAGCACAAACACAGTTCAGGTTGGCAGGCGATTTCAGAATTCAGAGAGCAATGAGAAGCAGGCAGGTGGGCTGACCAGATCTGGTGGGGTTCACTTCAGTAGAAGCTGCTTGGCTATTAAGGAAAAACCACCTGAGTAGCAGGTTGATTGGCCCTTGGTCTATTTAGTTATATAGAATGTGTCCGACATCTCCTCAAATAAGCTTAGACCTACAGACCTGGGGAGGAGGAGAAAAGCGTAAAAGAGGACAAACTGATTATTAAGAAACTGTTATGTAGAAGAAACAATGTGCCTGGCAACCTAGAACTAAGCCCCTTTGTCTTCATGTCGCTATACTGAATTAATAAATATGAAAATGTTTTGCAAAAATATGTAGACTACAATGTTGCTTAAAACTTGCTTGAAAGAGGCAGTTGTGAATTGGAGAGGGATCTGGGGAGACTAGGGAAAAGATGGGGTGAGGAAAGGGAGGGATAATAGAAATACAGTACACATTTATGCTGTTTTTAAAAAGTACTGTAAGACAAGCTTGGTTGAGACTTTCTTCCCCTACAAAGGTAGCTTTTCTCTATTGTTAAATCTGTTCCTGTAACTTGTATTTAAGTTGAAGGAACTTTCAAAAAGTGTTTTCTCATTCAAAAATAAACCCAACTGCTCTGTTACAGTTAGGATTGGCACTCAGGATAAATATCCTTTTCTACCTGAAAATAATTTCTGACTTTGACAGCAGGGGCTGTGGGAGCCAGAAGGTCTGGAGTATTTTAGACTAAGGGGCCGTGGGTTCTGGAACTCCGTGGTCGTGACTAATCTGAGGAGATAGTGGTGGCCTTCCCTGTTTCTGGAGGCTGTCGCCCTGTGCTAATCTTACATTCATCATCTAGTTCATTCAGGAGGGGCAAAGTTTACTTGGGCCTCTGCCATTTGTCCAGTCCTTCACCTAAAAGAAAGAACGTAGAATTGCTACAGCATGCTTGTCTGTCTGATCAGACCTTTCCTCTTGGTGACCTCTGTAG
Seq C2 exon
ATCTATTAAAAATCACCAACTTGAGAATCAAGTTTGTGAAACTGCACACCTTGGGGGATAACCTTTTGGACTCCAGAATGGAAATCCGAGAGAAGTACTATTACGCTGTTTATGATATGGTGGTTCGAGGGAACTGCTTCTGCTATGGCCACGCCAGTGAATGCGCCCCTGTGGATGGAGTCAATGAAGAAGTGGAAGGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002900:ENSMUST00000002979:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(8.9=100)
A:
NA
C2:
PF0005512=Laminin_N=PD(18.3=63.2),PF0005319=Laminin_EGF=PU(35.5=32.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types