MmuINT0091836 @ mm10
Intron Retention
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:69692314-69695834:+
Coord C1 exon
chr14:69692314-69692425
Coord A exon
chr14:69692426-69693039
Coord C2 exon
chr14:69693040-69695834
Length
614 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCCTGACCCCTGCCTTCCAGGTG
3' ss Score
9.41
Exon sequences
Seq C1 exon
GTTGTCATTAACCCCAACTATGAAGTGCCAGAATCAGATTTCTCTAACAACATCATGAAGTGCAGGAGCCGCTATGATGGCTACCGCATCTGGATGTACAACTGTCACGTAG
Seq A exon
GTAAGTTCCCTCAGCAGCCCCACCCTCCTCCAGAGGCTAGGACGCAGGACACAGCTGCCCTACTTTCTCCGGGGCCAGAGGCAGCTAATCTGGGAGCCACTGGGAATGGAGCCAGCATCAAATTCCTAGCTCAGAAAGCAAACCAGAGATGCATGAAGGCCTGGGTGGGGATTGGGTGTTCACAGCCAGCCCTGGCCAAGGAGAGAGGGTGGTGCAAGACTGGCTGGCCTAGCAAGAGCAGACCCCGGGTCTATATAAGGGCTGGAACTAAGGACATCAACCCACCACTCGTGTGACCACAACTATGTGGGCATCAGCAGTTCCTGGACTCTGAGTATTGGGTTTTTCTGTGAACCACCCTCCTGCCTAGTCACCAATAAAGAGGTTTTTCCTTGGGGAACAAGGAGAAAAGCAGCTTTTGTCCCTGTTGGTATATGACAGGCCTCATCCCTGATAGCAGTGAAAACTGAAGGCACAGTATCTATTTAAACACTCTCTGAACTTTGGCAAGGTACCTGTTTCGTGCCTAGCCCTAGCACTCACCAGTACCACACTGAGAGGGAGCCACAGCTGAGAGTGTACTGAATTCCATCTCCCTGACCCCTGCCTTCCAG
Seq C2 exon
GTGGAGCCTTCAGTGAGGAGACAGAACAGAAGTTCGAACACTTCAGTGGACTTCTAAATAACCAGCTCTCTGTACAGTAAAGAAGATCCTGGGCCAGGCATGATGGCTCATGCCTGTAATCCCTGCACTCATGCTGAGGCAGGAGGATTGCCACAAGATTTCCACTCTGGACATTAAACCAAGCTTCAGTTTCAAAAGAAATGAATGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAGGGGAAAGGGAAAGGGAAGAAAAATGACTTAATGGTCACTTACTGACTCCTGGGGGAATACTGATTACCACCTCTTTTCTAGCCAGATCCAGCTGAGAAGAAAGGTGCTCATTCACTCCCCAGACACTGCCGTGTGTCCCTGTCCTGAGGCCTTAGGGGCAGGGCTCGGGCACATGGCCATGGAAACTTGATGACAAGCTTAGAGCAGCTTATCCCATCCGAGCTTTGGCATGTCCCAAGTGTGACATCATCTGTGCTCTGCACAGAGGGGCCGTTTTCTTCTGGGAACACAGCAGGCATGAACTCAGCAACTGCAGAGGTGATCGGGCTGAACTCCGTTTTTCCCCTTCTTAGGTCATTTCTGGAAAACTTGAATATCAAGACCTCTGTATTAAGTTTGTTTGGTTTTTTGTTTTGTTTTGTTTTGTTTTTTCTTCTCATTGTACAAACTGCTTGGCAAAATCAACTTGAAGAAGGAAGGCTTTATGTGAGCTCGTGGTTTGAGGAACCAATCTGTAGTGGCAAAGAAAGTATGACAGCAGGAGCGTGAGGTGTCTGGTTCCAAAACTCAGTTATGGAGCTGAGGATGACCTTGGACCTCTGAGCCTCCCTCCCGCTTTCAACTCCAGAGTGCTGGGATCAAACCCAGGACTGCACACTTGTAAGGCAACATGCTCTCTATCGGTTGTAGCTGCTTTCTGAGCACTTACCCTTCTCTGCTGCTCTAAACCTGTACGTGATCTTTGCCTTACCGATCCGCACATTTTTCTGTCTCTGTGCTCCACTTGCTCATTGTCACTGTGGGTCTGAGTAAGAGCAGTGACCAGAAATGCATAGCACAGCCTGAATGCTACCCTGTCTTAAAATGTTCTCTGCCAAGCAAATGTGTCCATTACTCTTGAGTTAAGACTCACTCGAGTGCTCAGAACACAGGCAGGATGCAGCTGGATTCTTGCCAGGGTGTAACCTGATTGGCTTCTAGCTCAGTTTCAGATAGATAGTCCTTGGTTACCACTAAAACCTCAGGTACCAGGCCTCCACTCTCCACGTTCCACTTGGCGCTCTGGTCTTCCAAACTCCCACCACAATAACCCATTCAGTTCTGTTCTCTAAAAGCGCTCTAGGGCTTCTGGACCCAAAGTTCTAAGTTCTTCCAGATTCTCCCCCCAAGCCAACCCCCAAAGCTCAAGAACTCCACGACCATGCTTCTGACCTCAGTGATCAGTGACAGCTCTAGTCTTCTGTATTATACTTGACAAAAACAACTTAAGGGAAGGCTACTTTTGGCTTACAGTTCGAGAGTTCAGTCCCTCACAGCGGGTAAAGCATGGCGGCAGGAGCAGCTGGTCATGTGGCATCCACAGTCAGGAAGCAGAATGACGAATGCAGGTGCTCAACTTGCTCTCACCTTTATATTCAGCCTACAACCCCAGCTCATGGAATGGTGCTACTGGTGTCTAGGGTGGGCCTTCCCTCTTGTGTTAAACCTCTTCTGGAGACACCCCTATAGACCCACCCAGGGGTGTTTCCATAGTGGTTCTAAATCCCAGCTAGCTGATAATCAAGGTTATCTATAACAACCTCTTGCAGTTAAACCCACGTCTGTATTCCATGCAATTATAGCCACGACTTAAAGTACAATAGCAAGGCATACATCCCAAGGCTCCAAGGGATGGCTGAAGACTTGGATGGTTCTGGGACAGGATAGGAAGAGAAAGTCATGGGGGAACAACATGCAAGGGGCTCTTCACCTCAGAGCCTGGCTTATGCCAGCTGAGACTCCCAACACAGATAGCATTGTGAATGGTGCTAATATAGGGTCAGTATTCATTTTGCATATTTATATACAATTATAGATATACAAGTATAGATATTTCAAGTAAGAATATTAAAATAGCAAGGAATGATGATTAAGGCTGAAGTGTAAATGGCCTTTTTCCTTTCCTGGCTGTAGACATACAATTCCCTACAACTTTGCCAGAAACCCCACTTACTAAAAGGCATATCTCAAGACCCCTATGCTGGCCCAATGTTTTCATCTTATCAGGGCGCAGTCCTATCCAAGGTACCTCTGGAGCCACCTTATAATCTTACTATCAAAAGGGGGAAGGGGGGGTGGGACTTAGAAACCAATCGAGCAACACCAAAGGCTTCGGGACTCCTGTGTGTAGCTAGTTATTAAGACACTTAAGAACTCTCGTCCTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCTAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGACTCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAGAACTCTCGTCCTTGGAGAAGCCCACAGCCCAGCTCTCTGGTGTGTCTTACTCTTTCCCTGAGCACCTCTTAACCCCTGTAACTTAAATTTATATTTAAAATATTTTAAATAAACGTTTAACTCTCTGCTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205:ENSMUST00000022660:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(18.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PD(1.0=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACCGCATCTGGATGTA
R:
CCCCCAGGAGTCAGTAAGTGA
Band lengths:
357-971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types