RnoINT0086053 @ rn6
Intron Retention
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51364326-51365124:+
Coord C1 exon
chr15:51364326-51364437
Coord A exon
chr15:51364438-51365047
Coord C2 exon
chr15:51365048-51365124
Length
610 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CCTTGACCCCTGCTTTCCAGGTG
3' ss Score
8.46
Exon sequences
Seq C1 exon
GTTGTCATTAACCCCAACTATGAGGTGCCAGAATCAGATTTCTCTAACAACATCATGAAGTGCAGGAGCCGCTATGATGGCTACCGCATCTGGATGTACAATTGTCACGTAG
Seq A exon
GTAAGTTCCCTCGGTGGCCCCACCCTCCTTAAGAGGCTAGGACACAGAACACAGCTGCCCTACTTTCTCTGGGGCTAGAGGCAGCTAATCTGGGAGAAGCTGGGAATGGAGCCAGCATCAAATTCCTAGTTCAGAAAGAAAACCAGAGATGCATGAAGGCCTGGGTGGGGATCGGGTGTTCACAGCCAGTCCTGGCCAAAGAGAGAGGGTGGTGCAGGACTGGTTGACCTAGCAAGAGCAGACCCCAGGTCTATATAAGGGCTGGAGCTAAGGACACCAACCCATCACTCATGTGACAACTATGTGGACATCAGCAGTTCCTGAGCTCTGAGTGTTGGGTTTTGCTGTGAGCGACTCTCCTGCCTCATCAACAACAAGGAAGTTTTTCCTTGGACAACAAGGAGGAAAGCAGATCTTGTCCCTGTTGGCACATGACAGGCCTCATCCCTGGTGGCAGGGAAAATTGAAGGCACTGTACCTATTTAAGTGCCCTCTGGACTTGGCAAGGTACCTGCTGAGTGTCTGGCTCTAGCACTCACGAGTACCACACTGAGAGGGGGCCACAGCTGAGAATGTACTGAATTCTGTCTCCTTGACCCCTGCTTTCCAG
Seq C2 exon
GTGGAGCCTTCAGTGAGGAGACAGAACAGAAGTTCGAACACTTCAGTGGACTCCTAAATAATCAGCTCTCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758:ENSRNOT00000058663:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0118612=Lysyl_oxidase=FE(18.1=100)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PD(1.0=7.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAACCCCAACTATGAGGTGCC
R:
CTGCACAGAGAGCTGATTATTTAGGA
Band lengths:
182-792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]