MmuINT0091844 @ mm10
Intron Retention
Gene
ENSMUSG00000034205 | Loxl2
Description
lysyl oxidase-like 2 [Source:MGI Symbol;Acc:MGI:2137913]
Coordinates
chr14:69677813-69682338:+
Coord C1 exon
chr14:69677813-69677975
Coord A exon
chr14:69677976-69682094
Coord C2 exon
chr14:69682095-69682338
Length
4119 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CCCATGTCTGTCTTCTGCAGCTG
3' ss Score
11.14
Exon sequences
Seq C1 exon
GAGACCTGGTACTGGCATGGAAATATCTTCGCCAACAACGTGGTCATGAGTGGAGTGAAGTGCTCAGGAACGGAGCTGTCCCTAGCACACTGCCGCCATGACGAGGAGGTGGCCTGCCCCGAGGGCGGGGTGCGGTTTGGTGCTGGAGTCGCCTGCTCGGAAA
Seq A exon
GTAAGAATGTTGAAGAGCTGCTGCCAGCACTCTTCCCTCTGTTCCGGTTCTCGAGTTCAGGGAACCTCTCATTCCTCAAGACTCTGGGGTTTCACAGTGTGTGCTCGGGGTGGGGAAGCGCCGTGGATTCTGGGATTAAAGGGGACAAACAATACCTACTCCCCCAAACCAGGACCCAGCTGATGACACAGCAAAGAGGAAACAGGGAAGAGCTAGTTTTGGGAGTGAGTGTGTATTAGTTACTTTTGTCACTTTTAGTACCAAATGCCGGACAAAAGCAGCTTAAGGAAGAAAGGGTTTATTTTGGTTAATAGATTGAGGATACAGTCCATAGTGGGAAGGAGGAGGAGGAGGAGGGGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGCAGATGACAAGTTATATCTGCAGTCTGGTGGCAGAGAGAGAGGAAGGCTAGAGTTCTCCTTTCTACGGAGTCCATGGATTAAAGGCCCCCGTTTAGTGTAGGTCTTCCCACCTATGGTGATTTGAATAAGAATGGCCCCATAGGCTCATGTTTGAATAGCAGTTCCTTGGTGGTGGATTCTCACTGCCCTACACATACTATCCTTCTTTCTCTTCACCTTCCTGCATTTTTGGCTGCATTTCCTTCTACACCACCATTACTGGATATGTCCACTTGTCTACTTTTCTCCCATACTGTACGGATTATGCAGACTCCTCTGGGATGCGGAGCATAAGGCTCTTTGGTTTTCTTCCCCCAAGCCAGGCAAATACTGACTTCATTTCCACTCGCCTGCTCAGTCTCCAGCGTTCCCATTGCACTTGAACCCAACGTCGACATCAGCTACGAGAATATTAGGTAGCTCCATGTCTGCCTAATTTACCTCTAGGCTACCAAGCTATGTGTAACCTATGTGTAGTTAACCTATCCTGAGTTCAAGGGAAGCTAACCTCCTCTCAGAAGGAGCAAACCTGATGGGTCCCACCTCTCTGCTCTGTTCATCTCAGAGTATCTAGGGAGCCAGGTTCTCAGTGCTACCTCAGGGAATCTACATCTCAGAAGAGATACACCATGGTGTTGAGAAAGTTTGACCACTGAGCATTGCCACGCATGGCATGTCCTTGAAGGGAAGGATTTGTCAGCTGATCAGGTCTCCTGATGGGGATCTTCTCTCTGCCCACATCCCACCTGGATGTCCTCCTTACCTACCCTACATTCCACGCCTTATTTAGTCAAATGCATTGGATCAGCAGAGGCTGCCAGCTTCCAGAACTGCTGTGAGCTTGGTGGTCGCCAAGACCCAGAGATGGGAGCAAGGTCACCAGCAGAGCTGTGGACACCATGGTAGGCTCTCAAGAACTTGCAGGAGAAGTGTAGAAATAGTTGGGAATTAAACTAGAGCTGTTCTCCACATGCACAGTTAAGAAAGACTTCACTGGGGAAGTTAGTTTTTATTTGTTTCCTCTTTGAACTTGAGGAAGCAAAACTCCAGACCATACTCTCTTGAGACAATTACTTGCGCTCTAGTTCCACTCCTGTTACTGAGATAAGTATCCTGATGAAAAGTAACACAGGAGAAGAGGGTTTATTTGGTTCATAATTCCAGTTTATATGTTATTATTGTAGGAAAGTCAAGGCAAGAGCTTAAAGCATCACATCCATGGTCAAGAAAGACAAAAGTACCTTCATTGCCTTGCTTGCTCTCTGCCAACCCTTTCTACTCTCATACAGCCCTACCTAGGGAATGGTGCCGCCCATCACAGGCTGGACCAACTGGCAATAAGACAATGCTCACTGGCCAATCTGATCTAGGAAACCCCTCAGCTGAGACTCCCTTCTCCAGTGATTCTAGGTTCTGTCAAACTATTCATTAAGATTCACCAGCATCACAACATGCAGCTGTCAGAAAACTGAAATCAGGGATTTCTGTATCTGTCGGAAATCAGCCCTAGAGGACCAGTCTTCTTAAACCTTTCCACTCAAAACACCCGAGACAGTTTTATATGACTTTAACTACAGAGGTCTATAAATAGGTACACAAATCAAACCTTTGCTGGTTATAAATCACAAATTTATTATACAAGAGTTCTTTTGTATGCATATAACTTTTTCATTTGTTAAGGATTAAATCAAGTTTGGGTCGCTAGGGTTTCTATTGCTATGACCAAAAGCAACTTGAGGAGGGAGGGGTTTATTTCACTTAAAGGTTTCCTACCATCACTGAGGAAAAGAAGGTAGGCCAAAAACTCAGGGCAGGGACCTGGAGGCAAGACTTGAAGCAGAGGCCGTGGAGAGGGGCCTACTTACTGACTTGCTCTTCATGGCTTGGTCAACCTGCTTTCTTATAGCACGCAGGACCACCTGCCCTGGGATGGCACCACTCTCAAGGAACTGGGTGGACCCTCCCACGTTAATTATAAGTCAAGAAGTACACCCACCACAGGCTTGCCCACGGGCCAATCTGGTAGGGGCATTTTCTTAGTTGAAGTTCCCTCTTCCAAAAGGACTCTAGTGTGTGTCAAGTTAACAGAAAAACTAGCTAACACATATACTAATAAAATGGGTGCACTGTTTATTTTTGCATAAAGAAATAAATCTTGATGAATAAGAGTTGACCAGTACCTTGATATATAATTATTGATGCTAAGAATGCCATTTGCATAAATACAAAATACAGAACAACAGAAGTATGTTTAGAGCCATCTCGGAGATGATTGGAAATCTGTCCTTATCTCAAACCAAAGTTCCTTTAACACTGTTTTAAAAATTAAATTCAAGTCAGCATCTCAAGCAACATGTTTGAAATAGAACATTCTAACACAGTACAATTAAGGACATGCTGATGTGACATTTACAAATAGAAAAATATTAAAAGTCTTTGTTCCTGTCATTGAACCATGTTTCTACAAGAACAGAAAACTTATGTATAGCAAAAGCACTGTAACTCATAACATATGGAAATCTTGAATATGCACCAAGGTATTTCAAGCTGTGTTGCCTATGTGACATATACAATGTTGTATGTTCAAAACCGAGGCTGTCATCACAATACAACATGGGTTTCTAGCAAGAAACACCTCAGCCTCGTTGTACATTTGATTTTTTTAATTAATTTCCAGACATTGTGTGTTCAGAAACCTTTTACTGTTCCCAAAATTTTCAAGACCCCCACATTCACTTACACAGCTTTGTATGGGGTCTCAACCCACAGTTTCTAGAGCTAGGCCTCAGATGTTGTTGTGAAATGTTCTCTGACATGGATGCTTTAAGCACATGCTTTTTAGGAGGCCTGCAGTTCACATTTGTAGAAAGAGGTTCCCTGCCCCCCCCCCCCCAACACGGGCAACATCCTTTCTGCACAAGCTCTGTGCCACACTGTAAGGAAAGGAAAGGAATAAAACTCTGAGAAGCCACCTTGGCAATATGCATCAAAGCCTTAAAAATCAGGCAGTTCTTTCTCCATGAAACTTCTCTGCTAGAAATTCATCTATGCTAGAGATACAGTCTAAAGAAGAGAAAAGCACATACACAAATATAAACACACACACACACACAATTTAGGTCCGGATTGACTATAGGATATTGATCACAGGCTTGTCATTAATTTAAAAAGATTTCCAAGCATCCAAGGTATAGCAACCCTAAAAGATAGAAGTTGGTGGTGAAGGAAATATTACAGAACCATAAAATAAATGTCGCAATGTTCAGACATCAACAATAAAGGTACATTTTAAGGGGGACAGCATTAGTAGACCATAAATCTGCATGCATACTAGAAGAGATAGAATCAGACCATGGGTGAGCAGTGTCTCCCTTCGAGGCTGTTTTTCTGCTCTTTATCATGGAACATCTGAGGGGTCCTTGAAAATAGAGAGAATGGTCTGAGGAGCCCTTGGGTGCCTATCACCCACTATGTGTCAGTATCTTGCCCACCCACACTGGTAACTGAAGGGGAGTGTTAAGAAGACTTCCGGCAAAATGAAAGTGTAATTGGGGGTGACATGAAGGTAGCATGGGGAGCCCTAGGCCAGCTCCAGAAGGGCATGTAAAACGAGGGCACTTTTCTCAGGGGTGCCCTCGGAAGGGGTTTCCTCTTTGACCCATGTCTGTCTTCTGCAG
Seq C2 exon
CTGCACCTGACCTGGTGCTTAATGCTGAGATTGTCCAGCAGACTGCCTACCTGGAGGACAGGCCCATGTCCTTGCTGCAGTGTGCCATGGAGGAGAACTGCCTCTCCGCCTCCGCTGTGCACACCGACCCCACCAGAGGCCACCGGCGCCTTTTACGCTTCTCCTCCCAGATCCACAACAATGGCCAGTCTGACTTCCGCCCCAAGAATGGCCGCCATGCGTGGATTTGGCACGACTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034205:ENSMUST00000022660:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(49.1=94.5)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types