RnoINT0086049 @ rn6
Intron Retention
Gene
ENSRNOG00000016758 | Loxl2
Description
lysyl oxidase-like 2 [Source:RGD Symbol;Acc:1308435]
Coordinates
chr15:51348695-51354499:+
Coord C1 exon
chr15:51348695-51348857
Coord A exon
chr15:51348858-51354255
Coord C2 exon
chr15:51354256-51354499
Length
5398 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
CCCATGTCTGTCTTCCCCAGCTG
3' ss Score
9.94
Exon sequences
Seq C1 exon
GAAACCTGGTACTGGCATGGAAATATCTTCGCCAACAAAGTGATCATGAGTGGAGTGAAGTGCTCAGGAACGGAGTTATCCCTGGCACACTGCCGCCATGACGAGGAGGTGGTCTGCCCCGAGGGTGGGGTGCAGTATGGTGCTGGAGTCGCCTGCTCAGAAA
Seq A exon
GTAAGAACATCTAAGGGCTGCCTCTCACTCTTCCTACTGTTCCAGTTCTAGAGGCATTCAGGGAACCATCTCTTTCTCTTCCCAAGACTCGGGGGTTTCACAGTGTGTGCTCAGGGTGGGAAGGCACAGTGGATTCTGGGACTAAAAGGGACAAACAATACTGACTCCCCAAACACAGGACCTGGCTGAGGAAACAGGGAATGGCTAGTTTTAAGAATGTTTTCTCAATTTTAGTATCAAATGTCCAACAAAAGTGGCTTAAGGAAAGAAGGGTTTATTTTGTTTTAAGTTTGAGGATACAGTCCATGGGGGTGGGGAAAGGAAGAGGAGGAAGAGGAAGCAGAGGGTCACATTTTATCTACAGTCTGGAAGCAGAGAGAAAGACGAAGGCTGGAGTTCTCCTTTCTATGTAGTCCAGGACTCTAACCCACAGTTTAAAGCCACCTGTGTTTAGCGTAGGTCTTCCCATCTATGGTGCCCTGAAGGCTCATATATTTGAATACATGGTTCCTTGGCAGTGGATTCTAACTGCCCTACACATACAATCTGTCTTCCTCTTTGCCTTTCTGTACTTTTTTTTAGCTGCATTTCCTTCTACACCGCCATTACTAAATATGTCCACTTGTCCACATTTCTTCCATACTGTACGGATTATGCAGACTCATATGGGATATGGGGCACAAGGCTCATTGATTTTCTTCCCCCAAGCCAGGCCAATGCTGTCTTCGCTTCCACTCCCTTGCTCAGTCTCCAGCATTCCCATTGCACATGAACCCAACATCTACATCTGCTACCAGTATATTTGGTAGCTTCATGTCTGCCTAATTTACCTCTAGATTACCAAGCTAAATGTAAACTATGTGTAGTTAACCTATCCTGAGTTCAAGGGAAGCCAACCTCCTCTCAGAAGGAGCAAGCCTGATGAGTACCACCTCTCTGCTCGGTTCATCTCAGAGTACCTAGGTTCTCAGTGCTAACCAGGGAATCTACATCTCAGAAGAGTTACACCATGATGCTGAGGGAGTTTGGCATGTCCTTGAAGGGAAGGATTTGCCAGCTGATCTGGTCTCCTGATGGGAGTCTTCTCTCTGCCCACATCCCACCTGGATGCTGTGCTTAACTACCCTACATTCCACACCTTATTCAGTTGAATGCATTTGCTCAACAGAGGCTGCCAGCTCTAGGAAATGCTGGTGAGCTTGGTGTTCACTGAGACCCAGCAATGGGGCCAGGTCACCAGCAGAACTGTGGACAGCATGCTAGGCTCTCAAGAACTTGCAGGAGAAGTATAGGGATAGTTAGGAATTAAACTGGGGCTCTCCCCATATGCACGGTTAAGAAAGACTAGGGAAGTTAGTTTTTATTTGTTTCCCTTTGAACTTGGAGAAGCAAAACTCCAGAGCATACTCTCTTGAGATGATTGCTGTGCTCTAGTTCCACTCCTGGTACTGGGATAAGTATCCTGATGAAAAGTAACAAAGGAGAAGAGTGTTTATTTGGTTCATAATTGTAGTTTATATGTTGTTACTGCAGGGAAATCAAAGCAAGAACTTAAAGGGTCACATCCATGGTCAAGAGTAAAGAAAGACTAATGTACCTGTATTGCCTTCCTGGCTCTCTGTCAACCCTTCCTGCTCTCATACAATCCTGCCCAGGGAATGGTACCGCCCATCATAGGCTGGACCAACTGACAATAAGACAATCCCTGACAGACATGCTCGCTAGCCAATCTGATTTAGGAAATCCTTCAGTTGACACTCCCTTCTCCAGTGATTCTAGGTTTTGTCAAACTCTTAATTAAAACTCAATAGCAGCACGACATTCAACTGTCAGAAAATTGAAATCAGGGATTTCTGCAGCTGTTAGAAATCAGTCCTAAAGGACCAGTTTCTTCAAACTTTCCACTCAAGATGACTGAGACAGTTTTACAAGACTTTAACTACAGAGGTCAATAAGATAGGCACACAAATCAAACTTTTGCTGGTTATAAATCACACATCTATTTTACAACAGTTCTTTTGTATTCATATAACTTTTTCATTTGTTAAGGATGAAATCAAGTTTGCATGGCTAGGGTTCCTATTGCTATGACCAAAAGCAACTTGAGGCATAGTCATCCTTATCCCAAATCAAAGTTCATTTTAACATTTTTTAAATGAAATTCAAATCAGCATCTCAAGCACATGTTTGACATGCAACATTCTAACACAATACAATTTCAAAGGCATGCTGATGTGACATTTATTTATAAAGGAATGATAGGAGAAAAGTATTAAAAGTCTTTGTTCCTATCATTGAGCCATGTTTCTACAAGAACAGACAAGTCATGTGCAGGAAAAGCACTGTAACCCATAACATATGGAAATCTTGAATATGCCCAAGGTGTTTTGGGCGATGCTGCCTGTGTGACGTGTACAATGCTGTGTGTTCAAAACCCAAGCTGTAGTGAGGTCATGCAAAGCAACATAGATGGATGCTGCTAGAAACGCCTCAGCCTCATTACACATTTGGTTTTGGAATAATTTCCAGCCATTGTGTATCCAGAAACCTTTTATTGTTCCCAAAATTTTCAAGACCCCCGCCCCATATTCACTTACATAGTTTCGTTTGGGGGTCTCAACCCACAGTTTGTGGAATTAGGCCTAGGATATTGTGAGTTGTTCTCTGACATGAATGCTTTAAGCCCATGTTTTGTCGGACCCCTGCAGTTCACATTTGTAGAAAGAGCCCCCTACCCAACACATACACACACAATATGGGCATCATCCTTTCTGCACAAGCTCTGTGCCATGCTGTAACGAAAGGAGATGCATAAAACTCTGAGAAGCCACCTTGGCAATATGCATCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGTCCAAGAAGCAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACACTTTCCACATTGCTGTTTATCACCAAAGGAATTCAGGACTAGAACTCAAGCAGGTCAGGAAGCAGGAGCTAATGCAGAGGCCATGGAAAGATGTTACCTCCTGGCTTTCTTTTCCCAGCTTGCTCAGCTTGCTTTCTTATAGAACTCAAGACTACCAGCCCAGAGATGGCACCACTCACAATGGGCTGGGTCCTACCCTCTTGATCACTAGTTGAAAAAATGCCTTACAGCTGGATATTATGGAGGCATTTCCTCAAGGGAGGTACCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACACAAAACCAGCCAGGACAATTGACCCCTTGTCAACTTGACTCACAAACACATCACTATTAAGCCTCAACCCTTACTTTCTTATTCATCCCCAAGATCTAAATAACTTTAAGAATTCCAGTCTTTACAAATTCTTACATATTAAAATTTCAATCCCTTTAAAATATCAATCTCTTTTAAAATTTAAAGTCTTTTTACAATTCAAGGTCTGTTAACTGTGGACTCCATTAAAAATACTTTCTTCCTTCAAGAGGGAAAAAATATCAGGGCAGAGTCACAATCACAAGCAAAATCAAACTAACTGTCCAATGTCTGGGATTCACTTACGATCTTCTAGGCTCCTCCAAGGCCTTGGGTCATTTCTCCAGATCTGCCCTTTGTAGCACACACCTTGTCTTCTAGGCTCCAGATGTCTGTTCTCCATCTCTGCTGCTATTCTTGGTGGTCATCTCATGGTACTGGCATCTTCAAAACATTGCAGTCTTCCGCTACAACAAGGCTTCACCAGTAGTCTCTCATAGATTCTCTTCATGGTGCTAAGCCTCAACTCCTTTGCATGACCTCTTTAGTCCTGGGCCACCAAGTGCAACTGAGACTGCACCTTCACCAATGGCCTTCCATGGCCTCTCACAGTGCCCAGCCTCAGCTGCTCTTCATGACCCCTTCATGCCCTCAAAATCAGAACTGCCTGGGTGACTCTTACACAGCACTAAGTCCAGCCACAGCACAAGGTACAACCTTGGCAATATTGGGAACACAGCCTCTTTGTACTCTTAGAAAACACTTCTCAGAAGATTTCACCTCAATGATGCTGGTCTCTTCTTAATCACCACTAATTTCTTAGCTCCAACTAACCAGTATCAATAGTACCAGTAATGCAAAGGTTTCTATTTATATTGTTAACCACAGCTGATTCTTCAGCCCCAGCTAACCAAAATCATAAAATCTTCACAGTCAAAACAGCAACATCCCCGAAAATAATCTTTAATCTTCCCTCTGAAATTTCACAAGCCAGGCTTCCATCTTCTGCACTGTTCTCAACATTATTTCCAAGCTCCTACAGAACATTCCACAGAACTCTTAACATCGCAATGGCTCTTCTAGCTTACCCCACTATGCTGATACCAATTTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAGTTGGGGAAGAGAGGGTTTACTCAGCTTACACTTCCACATTGCTGTTCTTCACCAAAGGAAGTCAGGACTGAAACTCAAGCAGGTCAGGAAGCAGGAGATGATACAGAGGCCATGGAGGAATGTCACTTATTGGCTTGCTTCCCCTGACTTGCTCAGCTTGCTTTCTCAGAGAACCCAGGACTACCCACAATGGGCTGGGTCCTCCCTGCTTGATCACTAGTTGAGAAAATGCCTTACAGCTGGATCTCATCGAAGCATTTCCTCATGGGAGGCTCCTTTCTCTGTGATAACTCCAGCTTGTGTCAAGTTGACACACAAAACCAGCCAGTACAGCATCAAAACCTTAAAAATCAGGCAGCTCTTCTGGAAATTTCTCTGCTAGAAATTCATTTATGCTAGAGATATATTCTAAAAAGAAACACACACACACACACACACACACACACAATTTAGGTCCAATTCAACTACAGGATATTGATCACAGGCTTGTCTTTAATTTAAAAAAAATTCCAAGCATCCAAGATATAGCAACACTATAAGCTAGAAGTGGGTGATGAATGAAATATTACAGAGCCGTAAAATAATGTAATGTTCAGACATCAACAATAATGGGGCATTTTAAGGGGAATGGCATCAGTAGACCATAAACCTGCATGCATGCTAGAAGAGATAGAGTCAGAGCAACGGTGAGCATGTCTCCCACCGTGGCTGTTTTTCTGCTCTTTATTGTGGATCATCTAAGGGGTCTTTGAAAATAGAGAGAATGGACTAAGGAGCCCGTGGCTGCCTATCACCCACTATGTGTAAGCATTTTGCCCACCCATGCTGGTAACTGAAGACTTCCAGCAAAGTGAAAGTGTAATTGGGAGTGACAGGAAGGTAGTGTGGGAGCCCTAGGCCAGCTCCAGAAGGACATGTAGAATGAGGATACTTTTCTCAGGAGTGCGGGGTTTCCTTTCTGACCCATGTCTGTCTTCCCCAG
Seq C2 exon
CTGCACCTGACCTGGTACTTAACGCCGAGATTGTACAACAGACCGCCTATCTGGAGGACAGGCCCATGGCCTTGCTGCAGTGTGCCATGGAGGAAAACTGCCTCTCAGCCTCCGCTGTGCACACCGATCCCACCAGAGGCCACCGTCGCCTTCTACGCTTCTCTTCCCAGATCCACAACAATGGCCAATCTGACTTCCGCCCCAAGAATGGCCGCCATGCATGGATTTGGCATGACTGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016758:ENSRNOT00000058663:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0053013=SRCR=PD(49.1=94.5)
A:
NA
C2:
PF0118612=Lysyl_oxidase=PU(38.7=96.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]