MmuINT0092422 @ mm10
Intron Retention
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127605409-127605914:-
Coord C1 exon
chr10:127605786-127605914
Coord A exon
chr10:127605673-127605785
Coord C2 exon
chr10:127605409-127605672
Length
113 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTCTCTGTCCCATCCCCAGAGC
3' ss Score
10.9
Exon sequences
Seq C1 exon
ATTTTGACGAGTGTTCCGTGTATGGCACCTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGCTACCTGCTGCAACCGGACAACCGCTCCTGCAAGGCCAAGAATG
Seq A exon
GTGAGTGGGTCTGCCAGTGACCACAGAGCCGGGGACCTGCAATGCGGCTCCCCAGTGAATAGTCGCCTCAACGGTTACAAGTCCCAACTGCCCTTTCTCTGTCCCATCCCCAG
Seq C2 exon
AGCCAGTAGATCGGCCGCCAGTGCTACTGATTGCCAACTCTCAGAACATCCTAGCTACGTACCTGAGTGGGGCCCAAGTGTCTACCATCACACCCACCAGCACCCGACAAACCACGGCCATGGACTTCAGTTATGCCAATGAGACCGTATGCTGGGTGCACGTTGGGGACAGTGCTGCCCAGACACAGCTCAAGTGTGCCCGGATGCCTGGCCTGAAGGGCTTTGTGGATGAGCATACCATCAACATCTCCCTCAGCCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249:ENSMUST00000049149:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCACCAACACAGATGGCT
R:
CCCAGCATACGGTCTCATTGG
Band lengths:
246-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types