RnoINT0086492 @ rn6
Intron Retention
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70911579-70912081:-
Coord C1 exon
chr7:70911953-70912081
Coord A exon
chr7:70911843-70911952
Coord C2 exon
chr7:70911579-70911842
Length
110 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCCCTTTCTCCCATCCTCAGAGC
3' ss Score
10.87
Exon sequences
Seq C1 exon
ATTTTGACGAATGCTCTGTGTATGGCACTTGCAGCCAGCTTTGCACCAACACAGATGGCTCCTTCACATGTGGCTGTGTTGAAGGTTACCTGCTGCAACCGGACAACCGCTCATGCAAGGCCAAGAATG
Seq A exon
GTAAGTGGGGTTGCCTGTGGCCATGGAGCCGGGGACCTGCAACGCAGTTCCCTAAGTGAATGGTGGCCTCAACAGTTACAAGTCCCAACTGCCCTTTCTCCCATCCTCAG
Seq C2 exon
AGCCAGTAGATCGGCCCCCGGTGCTACTGATTGCCAACTCCCAGAACATCCTAGCTACGTACCTGAGCGGAGCCCAGGTGTCTACCATCACACCCACCAGCACCCGACAGACCACAGCCATGGACTTCAGTTATGCCAACGAGACTGTATGCTGGGTACATGTTGGGGACAGTGCTGCCCAGACGCAGCTCAAGTGTGCCCGGATGCCTAGCCTGAAGGGCTTCGTGGATGAGCATACCATCAACATCTCCCTGAGTCTGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053:ENSRNOT00000031005:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=79.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCACCAACACAGATGGCT
R:
CCCAGCATACAGTCTCGTTGG
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]