MmuINT0092489 @ mm9
Intron Retention
Gene
ENSMUSG00000049252 | Lrp1b
Description
low density lipoprotein-related protein 1B (deleted in tumors) [Source:MGI Symbol;Acc:MGI:2151136]
Coordinates
chr2:41313820-41324531:-
Coord C1 exon
chr2:41324342-41324531
Coord A exon
chr2:41313943-41324341
Coord C2 exon
chr2:41313820-41313942
Length
10399 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TCTTTCTTTTTTTTCTGCAGGTG
3' ss Score
13.63
Exon sequences
Seq C1 exon
GTTGTATACAGTGGTAAAGAGCTGAACCATCCTTTTGGACTGTCACATCATGGGAATTATGTGTTCTGGACAGATTACATGAATGGTTCAATTTTTCAACTAGATTTGATGACCAATGAGGTGACGTTGCTGAGGCATGAAAGAGCACCCCTGTTTGGGCTTCAGATTTATGATCCACGAAAACAACAAG
Seq A exon
GTATTAAAAACTCAGAACAAAAATTTCAGCATCTTACCTGTAATAATGCTTCACTATAGCAGCACAAAGTCACATTTTGACAATGTCGATATTTTTATGATGAACATTGCCTACTCACTCTAGAAACATTCAAATATCTGTGCTTGCTAAAATAAAGATATATTTATTTTCCTATTTATTTATTCATTCATTCACTGTACTTCTCAATATCTATCCCTCTCTTCTCTTAGCTCCCCTATACCACTACTCCTTTCTCACTTTCCCCTTCTCTTCTCCTCTGAGAAGGAGGAGCCTCCCCAGGTATCATCCCACCCTGGCGTATAAAGTCTCTGCAAGACTAGGTTCATCCTCTCCCACCAAGGCTAGAAAAGACAGCCCAGTTAGGGAAAGAGGATCCATAGACAGGCCACAGATTCAGGGACAGAGTCTGCTCCAGTTGTTGGGGATCCATATGAAGACCAAGCTGCACATCTGCTACTTATATGCTGTGGGGGCCTAGATCCAGACCATGCCTGCTCTTTGGTTGGTGCTTCAGTCTCTGAAGCACCCAAGGGTCCAGGTTAGTTGACTCTGATGGTCTTCCTGTTGAGTGCCTATCCTCTTCAGGGACCCTTAGTCCTTCACCCAACTCTTCCACAAGACTCTGCTAGTTTCATCTAATGTTTAGTTGAGGGTCTCTGCAGTGGCTTCGATTGGCTGCTGGGTGGACCCTCTCAGAGGACAGTTGTAGGGTTGTGAAAGGCAGTCTGGTTTCTGGTTGCGATAAGACTAGAAATCCCAGTGACCCTAAAGGGACAGAAGGCGTTTTCCTTTGCTCCCAGGGAACCAGGCTTCTGGGATGAGGCCACAGCCCTCCATAGATTTGTCGCTATCAGTCATGTAAGGACAATGCCCCGAGCCCCTCCACAGATAGAGGACATGACCTCAGGTCACATAGCCTCAATACAGACCTCCGTTTTAATGAGGTACCTTAAGGCGCTGAGGATTTAGCCAATAATCTCTCCTTCCCATAAACTCCTCCCTACAAAAGGCATTTTATCTCAGGTCCACCCTGAGAAACAGGGTATGGTTTTACTGATCTACCTTCCGCCATGACAATAAATGTCTTAAAAACATAGACTGCTTCTTTTCATCGGAATCTGCTGTAGGGAGAAATGGAGAAGGCTTTCTCCTAAAGAGTTTCTATCTAATCACCCATAGGAGGCCTCCCTGAGCTCCCAGCCACAACCATCACCAAACCAAGCCCAAACCCGCTGCAGCCATCAAGCCAAAGGCTCTCCCTGAAGGACCCACTGGAGCTCTTCCCTCTTCTTCCCCATCAGCCTTGGGCTAGATCTATCCCATTGGACCCCACTCTTTTCTCAGCTCCTCAGCGGCATCCAGTGATGCCTGAGTGCCCAGGAGCCTGAGAATGAGAAGGTACTGACCTCCTTGTAGGCCCCGGGACCTCGAGCCAGCTCCAGGTGTCCCATGCCTCAGTCTATGCTTCCTCCACCCCTGAAAGTGATGTCCTAAGGCTTTCCCCATAGCCTGACACTTGCCTGGCAACAGTGTGGGGTAAGCACAGTCAAAACTCCCAAGTCCTGCCTCCCTGAGCGTCTGAGTGCTGTAGCAGATCTGACACAAGACCCCATTAACCCACAGACAGTTATGTTAGGAGTCTGTCTGTAAGCATAATAGAGTATCATTAATAGTATGAGAAATTGATTCTTGCCCATGAGATACGTTTCACTTTGAGCCATCCATTACATCAGTGTCTGCTCCATCTTTGTCCCTGCACATCTTGTAAGCAGGTTTTATAGTTTGGTTGCTGCCATAATCTGCCCAGTAGGAGTCTTGCCTGGCTAAATGAGGTAGCCACTTCAGGCTCCATATCCTCCACAGTTACAAGTCATGGTTAGAGTTAACCCGCAGACTCCCTGGGGTCTCTCACCTAACCCACCTCGCCCCAGTCCCAGTTCTCTGGTAAGTCTAAGAAATGACCCTTGTCCCCTGCCCACCATCGATTTGTTCTTTGTTCCCTGCTCTCCCTACACCTGATTCCCATGCCCATACCCTTCTTCATCCCCTCTCCCATCCAGTTCTCTTCCTCCATTTGCCTCCTATGAGTTTTATTTCCACGTCTAAGGGAGATTCAAGCATCCTTGTTTAGGCTTTTCTTCTTCCTTAGCTTCTCTGGGTCTGTAGCATTGGTGTCTGGTAATTTAGGGCTAATATCCACTTATAAATGAAAACATACCATGCATGTCTTTTTGGGTCTGGATTACATCACTCAGGATGATAATTTCTAGTTCCAAACATTTGCCTACAAGAATAGCCTAGGTGAAAAACTCAGGGGATTTTGTTCAAGAGAAATCGAGATTTTTTTTCCCAAACATTTTTTTCCAGAAATGTTCTTTGTACTATTTTTATCAAAGAATAGTAGTGAAAGGAGGACTTGAATAATTGAGAAAAAAAGATAAATTACTCATACAGACTTTATTGACAATTCTGCTGCTGCACTGTCTAATTAGGCTCCACACATAGTTGAAGAATGTGTAATGATAAAGTGGAAGAACCTACTTCAATAGTCACATCTTACTAGAATCAGATAATATTGTTATATTTTATCTTCATGGGTTATTAATATTTATTATTCCACCACAATTATCATGACCCCTAACTAAGCACTGAAAACAACTAAGTAAACTATATGGTAGATGTTTTATGGGTTTTAAATAGTTGCTAGTCCTTTTAAATATAGATATCCTAATAAATATTTAATGGCCACACATTCCAATAAATTTAGAATGAATAAATTGCATCCTTAATTTTCTGATACAGATGTTATCAGCAGAGGTTTGTGTAGCAACAAGGCTTTGGAAGGTATTTGCAGTAAGGTAGTTATTATAAATAGAGCATCTCATTCTTAAGCCTCAGGTTTCCTATGTTCTTAAAAATTATCTATGGACAGATAAATGAAGTGCAGAAAATGGTAAATACTAACAGCTAATTATTTATTAAACTGTCTTTAAAAATAACAACATTGATATTATCTAGAGTATAATGTAGACAAGAAATGAATAACCAAAAATTTCCTGAAAGGACAATTCTCTCCTAGCATTCACACCAATCCCAAAACTTGACAGGCATATATTTAGCTTGGCTATGGTATACTGGAAGTGTGCCTTTCTCCCTTCCCACCCCTCCTACTTCTGCCTCCTCCCCCTTCACCTCTAGAATGAATACTGGTTTTTATTCTTAGGAGGCTAGAGCTCTCTTACTCTGCCCCTTGCCCCTAACTCCTTTTTAGAAACCATTACTCTTAAGTGTTATTCCTAAACTCCCTTTTGCCAGAATTCATATTTACAATCTTCAAAGACTTTAACACTGTGGTTGTTTTATGAAGTTGGTTATTAAATTCAAAGTGTTATGGAAAAATACCTTGGTTCCTTATAAAATTTACCTTTGATCTCTTCCAAATTTTGGAACCATGAAATATTCCATGTAGATCAGAAGTATATCTTTCAACAAATTTCTGTCAGGATCAAAATACTATTTGATACATTAAAAATAAATCTTACAAGACCTAGAACATGTGAGAAATTCACAATATTCTCTTATTTCATCTTAATCAGGAAATGCTATTTTAATATTATCTCTCTATACCTGCAAATATTTGAAGGAATCATTTATCACTGTCATGTGCAACCAACCACGTGACTTAAACAGTGGCATGTATCTGGTGCTTGGAAAATACCATTACTATACAACTAATCTATACTATCTTTGGATAAAGATATATTTTTAAAAAATTTTTTTTCACCCATTGTTTTAGTTAGGGTTTTACTGCTGTGAACAGACACTATGACCAAGGCAACTCTTATAAGGACACCATTTAATTGGGGCTGACTTACAGGTTCAGTCCATTATCATCTAGGCAGGACATAACAACATTCAGATATACATGGTGAAGGGGGAGCTGAGATTTCTACATCTTCATCTGAAGGCTGTTAGCAGAATACTTACTTCCAGGCAGCTAGGATTGAGGGTCTTATAGCCCAAAACCACAGTGACACATCTACTCCAACAGGCCCACACCTAGGCCAAACACATATAAACCATCGCACCCAGGTAATACAAGAGATCTTAATTACTAAGCTCAACATCAATGCTCATTTAGAAATGACTCTGTTCTGAGTTACTTAGAAAATATATTCAGCCTAACTGATTATCCTCACCTTAGGTGAAACAATCAATTAATTTCAGTTTTCTACCTAATCTTCCTACATCTAATGATTGTCCATACTATACTAACCTTAGAATACACAGTACAGTATGGAAAGGATTCCTAGCTGTTACTGCTTGGATTCAAGTCAATATTAATAAATTTTAGTCAATCTTCAGGAACATAGACATTGTATTCCACCTTTAATTAAATTGATAAATACAAGGTAATCAAGATCGTAAGAAGAATTAACATATTTAGATAAGAACAGCTTACCCTAAGATGGTATAATTTTCTCCCAATTTTCTTTTTTTTTCTTGTCAACAGTTGAATATAAGATGATATTTAAGTTTTAAAATACATAATTAGTGAATATATTTGGTTATATTTTTGTCCTAATATTCTTTTTATTAAGACTTTTAGAATAGTTTTATTATGTGTATGGATGTTGCGCCTGCATGGATGACCGCACTTTAAAATCACACCTGGTGCTTGAAGGCAGGAACGGTTGTTAGATATCCTGATGCTGGACTTACAGATGGTTGTAAGCTGATATGTGGGTGCTGGGAATCAAAGATGCATCTTCTGCAAAATTAGCCTATGGTCTTTGCAGAAATCCAGTTAGACCAGCATCATTTTTTGAAGAAGCCCTCTTTTTATCCATTTTATGGTTTTAACTTCATTGACAAAAATCAAGTGTCAGGGTATTCAATTCTAGTCCATTGATCAAACTGTCTGTTCATATACCAATATGCAGTTTTTTTAATATTACTTTGCATTATGTAATTAAATCAGGGATGGCGATGTTCTTCATTCTACAAGATTATTTTAGCCATCCTTTATGTTGTTGTTGTTTGTTTTCCATATGAAATTGAAAATTGCACTGTCTAGATCTGTAAAATTATGTTTTTGGAATTTTGACAGGAATAGCATTGGATATGTAAATTGCTTTTGGTAAGGTGGTCATTTTCAGTATGTTAATCCTATCAATTCATGATATTTGGAAAGCTCTAGTCCACCATATAAACAATCTGAAAGAAAAAAGTTACATGATTTTCTCACTAGAAGCTGAAAAATTCTTTGACAAAATCTAGCATCTTTTCATGTTAAAAGTCTTAGAGATATCAGGGATAGAATGTGCATGCACAAACATAAAAAAAACAATATATAGCATGCCAATTACCAACAAAAGCTAAATGATGAGAAACTTAAAGGAATTCCATTAAAATCAGGGATAAGACAAGATTTCCCACTCTCTCCATATCTATTCAACATAGTTCTCTAAATTCTAGACAGAGCAATAAGACAATTAAAGGAGATCAAGGGGATACAAATTAGAAAAGAAGAAATGAATTATCACTACTTTGACGATATGACACCAAAAATTCTACCAGAGGATTCCTACAGCTGATTAATCTGCTCAGCAAAATAACTGGATTCAAAATTAACTAAAAGAGGCCAGGAGAGATGACTTAGCTGTTAAGCACACTCTCTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCATATGGTGGCTCACAACCATCCGTAATGAGATCTGACACCCTCTTCTGGAAGATCTGAAAATAGCTACAGTGTACTTACATACAATAATTAATAATAATAGTAATAATAATAATAATAATAATTACAACACACCCAAATGTAATGTTTGGGAAAATATTAGAAGGCATTTGACACCACCACAAAATTAACTAAAAAAAAAAAGGCAGTAGCCCTCCTCTATACAATTGAAAATGGGCCAAGAAAGATATTAGGGAAACAACACTCTTACAATAGCCATTAAAATGTAAAATATCTAGGCATCACTCTAACCAATTATGTCAAAGATGTGTATGACAAGAACTTCAAGTCACTGAGAAACAGAACTGAGGAAGATGTCAGAAGATGAAATGATGCTTTCTTATTCTATTTTGTCTTGTTTTGTGTCATTTTGTTTTTTTAAGATATCGTATATAAGCCAGGCGTGGTGGCGCATGCCTTTAATCTTAGCACTCAGAAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGATCTACAAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAAATAAAAACCAAACAAACAAAAAAGATATAGTATGTAGCTGGGCTATCCATTATGTTGGGATCCTCCAGCATGAGCCTGTGATTAAAAGCATGAATCATTACACCAGGCTAGAACATGTGTCTTATTTCTTACTTTCTAAAGTAGTAATTGTTGTTGCATTTGTTTGACAATTTTTATTGTTTATTTTGAGAGAGGATTTCTTGTAACCCATTTGGTCTAAAACTCACTTTATAGATGAGATTGACTTTGAACTCTTAATCTTCCTGCCTACACCTGCAAAGTACTGGGATTAGAATCACCATTAAGTACAGATGGAACTCTTTTTTTTTTTTTTTTTAATTTGTAGTAAAAGCAACACGAAGTTTTTTACTCACATTTTTTTAATATAAAGGTCTACTTGACTCCTTGTGTAGATATTAGGAGTCAAAGGCTTTTAGTCATATCTCCATCATTCCAGGGGTATCAGTGCCTACCTGATGTATATATGTGGGGGCAAGTCACAGTGTTTTGTGGATTATGTAAGTGTGAGGTTTATAACATATCCATATTCACATTTTTCTCTTCCCAAATTCTCTATTATCATAGAGAAAACTCAGAAGTTTTATCTAGATCCTATTTTATTTTATTTTTTATTTTTACATAACTCCTTAGTATCATCTCTCTCTTTCTCTCTCCCTCTCTCTGTCTCTGTCTCTCTCACACAAAGAGAGAGAGGGAGAGGGAGAGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAATAGCCTCAAATCAATCTAAAGATAAGCACAATAGGATTAAAATATAATTGCTAAAGGAAATGAAATTTATAGATCATTTTATCATTTCTTCAGACTGTTTAGTTGCCTTTTCTGAAATGTTCAAATATTAAATGCAGGATCAATCAGACACCCGAGTCTTACTCTGACACCTCTTATCTGATATTTGGAATAAACACAATGTCCAGGATATCTTCTAACTTATAAATTAAAATAGCACCCACTACATATGAAAATAAAATCTAAACGTGGGTCTGTTTTACAAATGTGGCACAGGTACTTTTAAATTCAGATATGATAGAAAGAAAATGCAGGGACAAAAATGGAGCAGAGACTGAAGAAAAGGCTATCTGGAGACCGGCCCAACCTGGGATCCATCCCATGGTTAGGCCCCAAACCCTGACACTATTTCTGATACCATGTACTTGCAGACAGAAGCCTAGCATAGCTATCCTGTGAGAGGGTCTACCAGCAGCTGACTGAGGCAGATGCAGATATTTACAGCCAAGCATTTGGCTGAGATCAGGAACCCCTATTGAAGAGTTAGGGGAAGAATTGAAGAACCTGAAGGGGCTGGCTACCCCACACAAAGAACAATAGAATTATCTAACTCAGACCCTTCAGAGCTCCCAGATATTAAACCACGGACCAAAGAACATATGGGGACTGGTCTGTTGACCTCAGCACATATGTAGCAGAGGACAGCCTTGTCTGGCCTCAGTGGGAGAGGCTGAGCTTAATCCTGGAGAGACTTGATGCCCTAGGGATAGGAGAAGCTGAGGGTGGGGTTGAGCTGGGGCTGGGTGGGAGTGTGAGGGGAGAGGGTGAGTGGGTGGCAGTGAGTGTGTGGGTAGGGGACCACCCTCTCAGAGGCAAAACGGAGAGGGGTATGGTGTAAAATTCTGGGAGGGGTGAACAGGAAGCAAGGCAACATTTGGAATGGCAAAAAAAGAAAATAATTCAGTAAAAAAGAAATAATTACATTATGCAAATAATTTTCAGAAATATTTTAAAATGATATATTTCAAATCACACTATCATGTAAGCTCTGATGGGAATATGTTGTTAAAATGAAATTGAAAAGTAAACTGGGTAATTTAATTATAAAAAGGTCTAGGCCCTTCCAATGAGATATGTGAAAATTTTCATGTTAATTTGGCTTTGGTATTTCTATTATGGCAGTGCAAATACTAATTCTTTCTTTTCAGAATATTGTATTCAAATAAGGGGAATATATTTAAAATTTTAAATAATGTTGATTTATTTCAGAATATAGAAAATTTGTATTCAATGAGAATAAATGCCCTGCCATTCATTCCTATATTATGCATATATATTTAAAACTATGTAACCAGATGGATTATAATCAAGTTTCTTATTTCTTACTGTTTCAGTTATGTATACCACTAAGTATTGTAATATCATCCCAATTTTACTAAATCTGGATGCTACTAAATGTTACATATGACATTTAATGATGCACATGTTGTGAACACAGAAAGGGTGCCCTAATGTTCAGGAAAGTTTTACATATTTGTCCCATAACCATGGAATATATATAGAAGCTACATAAAACATTTCTACAATCTCTACTAGAAAAAAGTATGAGATATTTTTCATTATCCTCTTAGTTTAGAAATTGAAGTCATTGCTTGTATGATTTGCTACCTTAGCTTTAAACATGCTCCATAATTTTATGTATATAAAAAGTTAAATGCACTTCTCAGAAAATGGAATAAGTTGATAAGAAACTCTAGGTTATTTCTTCTGATCTGAGATTTATAAGACAATATGTAGGATTTTATAGTATTTAGCACCATTGTGGAGAGCTTCTCTCCCCTACAGTGCTCTCCATGGCAATACAACCCTTCTGGCACGCAGTGTGATAACCCCATCTGTGGCTTCAGTTCAATATTAATATTTGTATAATAACTATCATGTTTTGATTGTTTATTATTTATGGCCCAAGTAACTAAAGACTGTCTTTTTAGTGTTTTGCTCCTAAAATAATAAGACATTTTAGTTATTGACGATATTAAAAATTGAAGTGTGCTGTAAGATTATCTGATAATTGCAAGGGCAATGTGCTTCTGGGATTTAATAATTCTCTCTGTAAAGATGGATGCAAAGAAAGTTCAGCAACCCTCTTCTCTCTTCCCTCCTTCTTCCATCCCTCCCTCCTGCCTCTTCTATCTGTCTGTCTGTCTGTCTCTCATTCTTTCGACACTGTTATTCTTTAGCTTTTGTTCTTCTTGGACTTGTTCTGTTATCCAGTCTGCCCTGAAACTCACAACAGTCCTCTCTAAGAGTCACATTTACAGGCAAGAACCATATCACCTGGTTTAATTCATTTCCTCAATTGATTGTCCAAGTAGAAGGAATAAATGATATTAAATTTGTGATTATATAAATTTACAGTTTTTTAACTATATTTTTTTACAAAAATCATATCTCAAGGCTCTTCAAATATGTCTTTGATTATTTTCTAGAATTCATCATGGGCTCCTGACATATGTTTATGAATTCCTTTATAAATGTCATCTCCTGTGCTCCATCAGTGACTCTATTCCCAAAGTCTCTAGTCCAGCACTTCTGCCTTATGTGCTGTGAATTTTCTCGATTTGCCATGCTTTGTGGTATCCTCAGCAAAATAACATGCAGCGTACTCACTCCACTAGAGAAAAATCAAATCCCACATGCTTGCCTGCTCAATGGTGACCTCCACCTACATTTTCAGAGACCTGCTTTACTTTTCAAAGTACTCAGGCCACCATGCTATAATCATAGTCTGGGGAATTGTACATGACAGCCAAAAAGCTACCTATCTCCTTGCTCCAGGTCCCTAGAAAATTATTACCTAGTGCATAGTCCTCCTTCAACAACATATTCCTCTTATGTACCAAAGCAACATATACTTTCAACTGGTTTTGAAAGCAACATCTATTCAGCTTCAATGTTGAGTATAACCACAAAGGTGAGCTGTATATATAACATTTCCATTCACATATTTATGCCCATTTATATTTCAGTGAAAGAAAAATATTCCTGAAAGCTAGGTTTGGCAGTATATGTCTGTAATTCTAGCAGTTGGATAGTAGAAAAAAAAAAAGGATAAAACATTAAAATGTAGCCTGGGTTCCATAAGCTTAAAAATTAACCATATTAAAGACATTGCATAACCACCAGCTTTGTGACAATTCCCTTTCTTTCTTTTTTTTCTGCAG
Seq C2 exon
GTGACAATATGTGCCGCATTAACAATGGGGGCTGTGGCACCCTCTGCCTGGCCATTCCAGCAGGCCGAGTGTGTGCTTGTGCTGATAATCAACTTTTGGATGAAAATGGAACTACTTGCACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049252-Lrp1b:NM_053011:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(34.2=20.3)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: