MmuINT0092601 @ mm10
Intron Retention
Gene
ENSMUSG00000027070 | Lrp2
Description
low density lipoprotein receptor-related protein 2 [Source:MGI Symbol;Acc:MGI:95794]
Coordinates
chr2:69491755-69492461:-
Coord C1 exon
chr2:69492352-69492461
Coord A exon
chr2:69491933-69492351
Coord C2 exon
chr2:69491755-69491932
Length
419 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
ATCTTTTTGCACGGTTCTAGGAA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGTTGACACTCCGGGGAGATACGAGGTATGGGAAAACCCTGATTACCAATGATGGCACCCCGCTTGGTGTTGGTTTCCCGGTTGGCATAGCTGTTGATCCTGCACGTGG
Seq A exon
GTGAGTGACACCAAGTGACAGTACGTTCCTGTCTGCACCATCTCTGTCAGTGTCCTGGTCCTGTTAGATGAAGTGTCCTGTTAACATTTCAAACTGTAGGATATGTGACATTTGAACAAGTTAGACCTCAGTGAGGAAGAGCAGTCACTGTGAAGATCGGTAACTCTGGATTATGTTGAATGTGAAAGATATAGGCTATATCTTCTTTTAGAACAATGTGTTCTGACTTATCAGACCTTAAAGGCTGAGTAGATGGGAAATTTTACCATCCTGTTTTCAGTACCATTGAAAATGGCATGTAGCCCCCATAACAGAACTACAGAGACAGTGGCAGGACGCTGGTTAAATGTTCCCCTACATTGTGTTGCCCTGATCTATTTCTTGGTTCATAAAGCACTCATCTTTTTGCACGGTTCTAG
Seq C2 exon
GAAACTGTATTGGTCAGACCACGGGACGGACAGTGGGGTTCCTGCCAAGATTGCAAGTGCTAACATGGATGGAACATCTTTAAAAATTCTCTTCACTGGGAACATGGAACATCTGGAGGTTGTCACCCTGGACATCCAGGAGCAAAAGCTCTACTGGGCGGTCACCAGCAGAGGCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027070:ENSMUST00000080953:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PU(0.1=0.0)
A:
NA
C2:
PF0005812=Ldl_recept_b=WD(100=76.7),PF0005812=Ldl_recept_b=PU(28.2=18.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGACACTCCGGGGAGATA
R:
CACGCCTCTGCTGGTGAC
Band lengths:
287-706
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types