MmuINT0093497 @ mm9
Intron Retention
Gene
ENSMUSG00000055003 | Lrtm2
Description
leucine-rich repeats and transmembrane domains 2 [Source:MGI Symbol;Acc:MGI:2141485]
Coordinates
chr6:119274219-119280784:-
Coord C1 exon
chr6:119280513-119280784
Coord A exon
chr6:119274427-119280512
Coord C2 exon
chr6:119274219-119274426
Length
6086 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATTTCACCCTCTCCTCCAGGTC
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGCTTGCTGTTGAGCACGCGCGCTCTGATCCTTCTACCTCTCCCCCTCTTCGGTCTGTCTTCCTCCCGCCCTCCCTCTTTCGCTTCAGTTTGTCGCTGACCCCGCAGCCCCCTCCCCGGCAGCGGCAGCTCAGCCTGCGGGTCCGCCTCCTTCACAGGCGCTGCCCAGTCTCCCGCTGCCCTGAACCAGACCGGACATCCCTGCGTTCTGCCTGCCAAGCTGCCCGTGTGTCCGGCTACCTGGTCTGAGCATCAGGTCCCGGTGCAAAAAG
Seq A exon
GTGAGTTGTGAGCGGCTTCTGGGAGAGAATGGGGTTGGCGCAAAGGGCTTGGGTATGGGAACTAGGGACCACCTGTCCCTGCACGATGATCAGGGCTTTCTTCCCAGGGCAGTTGCTGAGGTGGGGTGGGGGAACCACTTAGGACCAGATAACCTGGGCAACCCAAAGGTACAGAGCATTAGGAACTCTGACTCCTTAGTGCTGGGGACATAGCGGTGTATTCTGCTAAGGAGGGGGTATGGAGGAGGGGACAGGGAGGAGAGCAGTGCTGGTGCCACATGATGGCCCCGGGTAGCATGGAAATGTCCCTGCAGCGGGAGGAGCGGCAGCTATGGGAGGGGGAGACAGCTTGGGTGTTGGAAACAGGCTGGCATTCTGAGAGGCCTGAGTGAGGGTGGAGGGTGGAGGACCCACTGAGTGAGGAGGCGCAGGCTGGACCTTTATACCAGTTGCTCTTGCTGGCCTTGCTGGCCCCGAGGTAGCTGTCCTTGAACAAGGGTGCAAAGGAGCCCTTCCTAGTTGGAATAGTCTTTGCAGTCCTGATAGAGCCTCCTTGGTGGGGGTGTGGCTGGGAGTGAAGGAGGGGTGTCTGGTAGTTCTTCCTTACAAACCCAGGCCTTGATTTTTAGCACACTAGATGGCCAAACAAACCAGGAGCCCGAGATGCTTAGGTGGTCCACCACTGCATAATGCCCTTTGCAGCAGGTGGGTCAGATGCCTTCCAAGCCCCGGGTGCTTAGTGTAGGGGGCAGCGTACAGCGAGGTCACATTCACCTGCTGCCTGGCTCATATGGGCATGGATGGCCAACTCGGAGCAGGACACTGCTTCTCAGGAGCCCCAGGCCCATTTCATAACGCTGAATTCTGCCCAGGAATCTGCAGTTCAAATTCCTGTATGGCCGGCAGGTCTGGGACTGGGCTCTGATTGGTTGCTCTGCCTCCCACCCCCAGCTGTCTGCATTCCAGGGTGGTGGTGGGGATGTTGGCACCAGGCTGCCAGGGTTTGTTGGGCATTGCCTTGTGTGACTCAGATTGACAGGCCCACAGCTTAGATAACTACAGCAGGTGGGGGGAGGGGAAGGAGCCAGCATGTGGCGCTGGGCGGGGGAAGTCCAGCTGGTAGGGAAATCCAACATCAGCTTCCAAGCTGCCAAGAAGAGCCCAGCGCTCCCACCCCCACCTTCCCACTGCAGGAGGGCTCCGGCTCTGCCAGAAGAGGGAGACAGGAAAACCAGGCAGGACAGGCAAAGAGACGGGCTTCTTAAGCCACCCCCCCCCCCAGCTGTGTTCTTTGAGGTTTGGCTAGAGGATGTGTCTGCGCTCAGGACAAGCTTACCCTAGTCTCATTTTCCAAGTGCCAAGACCCAGAGTCAGGGTCTTGCTTTAGTCAGGTGGGTGGCAAAGGAAGGCGCTGGAATGGGTGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTGGGAAGAGCGGGGAGCCAGGATGAGGCTTGGGTGTGGAGTGAGTGATCTTCCTTGGCACCTGCCCAGGGAGGCAGTTGAATGGTGGGAGCCTCCCGGGTCCTCAATGGCTTCTTCAGCGGCACAGAGCAACCCCGTGTGTGTTGGGTTTCCTTCCTACTCTGCTTTCCAAGGTTTCTTTCTGTCAGAGACAGGAAGAATTTCACAAGGAAAGTGGCTCAAGAAGCTGGCGGGGATAAGACAGCGTACTGAGAGGAACCTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAATGAGAGGAACCTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAATGAGAGGAATTTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAAGGGGTTTAGAAACTGCTTCACAGCGCAGCATGTGCTTAGGGGTGACTGACAGGGGGCAGAGGTGGGGGCATTTACTAGAAGGGAGGGCCTCATGGCCAGACAAGTGACAGCAGCTCAGGGGACATTTCAGTTTCCCGTGTTCCGGGCTACCAGGAATTCCAATTGCCTAGACCAGATGTCCAGACTCCCTGGAAGTCCTCTAAGATGGGACAAGATGACTCGCAGGCCACTCGCTAGCCTAGCCTTGAGATTCCTTGAAGAATAAATCGGGTAGACCATGCAAGCCCTTTCTGCTTCCCCTCTGTAGGTGTATAGAGCTGGGGGCAAGGAGGGGAGGATGCAGGAGACCTCCTGGGAAGATAGACACAGCATGGGGGCCCAGGAATCAGGAGCGGAGGACACTCCCTGATGCATGTTGCAAACACTTGATTTGAGGGTGCTAAGAAGGAATCATGTGGATCCCAGGCCTGGGGTGAGGTGGTTTTTTTTTTGGTGTTTAGCTGAGTGTGAGCCCAGATCATGGGGAGAGTAGGCCTCCATCTGTGGGAGAAACTGGAGGGCAGGTGTACTCTGTCATTCTAGCCTCAATGTTCTGCAAGCCTGGCTGGCTGCTCCAAGCTGGGGGAGGGGGCAGCTCCCACACCCTCTCAGTAGTGGGTACAGCAGCCATTGGGTCAGCAGGACCACGTGGAAGCTCCAGCTGCCCCCTGCTCCTGCCTCACCTGTCTGCTGCGCCAATCCTCCACTCCCCAACTGCCTCACCGCATCCCCCAGGTCCCAGCCCGGAGAGGTTTGCTGGATTTCTTCCAACCTATGGGTAGGATGGGGACAGGGCTGGTTCTTGGCTCAGATGTGATGAGGAGATGGATGCCTTATAAACTGTAAAGTTCTATATGGATGGGGGGCTATGTCTCTGTTTCTGAATCAACCTTTACATGAGGGGTAGGGCTGAGGCAGGAACTTGTGAGGGCAACTGAGTCAAAAATTTTGTGGACAGAAAACAGGTACAGGTCCAATTGACGACATTCTTCCATTTTCCTAACCTTTTCCATGCCTCAGTTTCCCTATGATGTTGCTAAAGACACCTTACTGAACTGTATGAGGATGAAGAACGTAGCATTGTGTAGCTCTCTGTCTGTGGCTGTTAGCATCTCCCCATGTTAAAAGCTTGTATGAGGCCCTCGGGTTGGTGCCCTTGTCTTGGCCTGACTTAGGCAAGGTTAGTTAAGGTTCTGGGTGAGCTCTAGACTCATTTTTCCTTAAAATCTGCCATTTCCTGTCGCAGCTTCTCTAGGCTAACTGTATGCAGCCCATGCTGTCCCCACTTGCCTGACCTAGAGTTATACCAGCATGGCTTTCTGGGTAGCTGTTAGGCCCTGGCTCAATCTGCTGGCCTGTACTTCTCAATCTTGAATATGTCCCCAAATTGCCTGGGATTTTGTTGTCTGTGCGGCACTTGAGATTTAGCATTTCTGAAGGGTTCCAGGCTAGCTGATCTGATTAGCCCATCGGAGTCAAAACTGTAGGTTTCTGGTTTGGGAGGTTCAAAGGTTGGTCAGTCCTAGCTTATCAACCCCGTTCTCCAACCTGAGTCCAGGGATCATGCTGAGCCCAGCCTTGTCCCTTTGGTCTGTTTCTGGGGATAAGGTAAAATACAGGTTAGTTCTGGGTGCAGGTCCTGCAGATGAAGGTGGGGTGGGGGTGGGGAGTGGGGAAGGGGTGAAGACAGTTTCTTTCCCTCAAGTAGGACCTCCAACTCCATTCTGCCTCCCACTCCCACAGAGTGTTAATTTATTCCAGCAGTTGGCCAGTGCCTGCTGCAGCAGCTGTCCTCTGCCTCCCAATGTAGGTCACCCCTTTCCTGAGGAGTCTCTGCGGTTCAGGGCCAGAAGGGTCTTTTGCTGGGAGGTGTGTGAGTGGACTTGGGGTGGAAAGGCTTAGGAAGCGCCCCTCCCCCACATCTCTCCAAGGATCAGGATGGCATTGACATCAATCAGAGGAGACAGATCAGCTACCTAGGCAGAGCGGGGGCGGGGCGGGGGCGGGGCGGGGGCCAGGGGCATCTTCTCCTAGACTCCTGGCCTCTTTTCTCCAGAGGATCTCAGCCACCAGAGTCCTTTCTGCTGCTTCAGTAGACAACAAACAGCCTGGCCTGCACTGTTGGCTCACGGTCCCTGGGCATCATAAGCACTGGGGTCCTGAGGGGGGGAAATGGGAGGAAGAACCTGGGAACCTCAGGTGGAGGTCAGCCTGGAGGAGGCTTCTCCACAGCCTGTCCCACAGACATGGCCTGGGTCTCCACCGATCCTTGGACCTGAAGAAAAAAGCTGTCCTGGCTTTAAGGCTGCCTCATGGGGTTCTCAGCAGATCTTCCTTCCAGGCCGGAAGTGCCCCTGTACCACCTGCTGGGGCTATGCGGGGACCATGAGGCATCCTATCCTTTTGCTGCCTCATGAATGATGGCAGCTAAGTGGTGCTGGAGTACTGCCAGCAAGGCATGTGTCTGTGTGTGGGTGTGCATGCATGTACGTGCCTACGTACATGCCTAGCGACTTATGTGTGGGAGTGCATGTGTGTTATGATACACTCAGTTGTGTGTCTTTGTATGGGACTACCCCATTCTGCTTCAAGGCTGTGTCTGGGAGCTCTGTGCACACACAAGTGTCTCCCTACTAGGGCCCCTGCAGGGTGACAGCCCTGAGGAAGTGGGTAAACAGCCTGACTCAGAAGCCTGTGACCCACCCTGACTGACCATGTAACCTTGGCAAGCTGTTATGATATCTGTGCATTTGGGTGCTGCAGCCGGCTCGCTATTTAACAGGTACTGTGACTGTGGTTTGGCTGTTGCTTCGAAGGTCAGGTATTGGAGGCACATAGCAAGAGGGAGAGTGCCGTCTGAGACGGCAGGTCTGTGTGGGCATTGATGTGAGGGGCAGAGATATATAGAATAAGTACACGGTGAACACGACATGGAGTGAGGACCTGTCACAGCCTGCAGCAGGCTCAAGCATCCGTGGGACCGACCTCCCTTGATGGTGAAGAAGCTCACCATAGGCTCAAGGCCAGGTGGGAGCCTTTGCCAATATTCCTTATGTAATGTCATTCATGCCAACTCTGTTTCCACCCACTGACCATCAGGTTGTCACTCTTAGGGTCGGGGATCTGGGGCAGGGTTTAAGCAGTTTGTCAGAAGGAGATGGAGGGCATGGATTTGAACCCAGAGATTCTTTGCCTGTGGATCTGAGCCAGAAGAGTTCTAGAAGAATGGAAGCCAAGCTACTGTAACCACTAAGTGCCGGGGCCCACACACATGGCTTCTGCCCTCAGCCCACAGCTGTGCTGAGTTACAGCCATGCTCATTTATGGTGCGCACACCCTGCTGGATCCTTCATAACTCTTGCCTCTTAACTGGGCAGTGGGGAGATGAAGTCAAGGCTGGCAGATGGGTACCACAGTCCTGAGCAAGTTGCTGTTGCCGGGAGCAAAGCAGAGTATCTGAGGGCCACATAGTTCATAGCAGCACAGGCCACCTCGGTGGCTTTCTGAAGGTCACTAGAGGCATGCAGTGGAGGTAGAGAATAGAGAATGTAGCTGGGCTTTGTGCCTTTAATCCCAGCACTCGGGAGGCAGAGATCTCAGAATTTGAGCCCAGCCTGATCTACATAACAGGTTCCCGGCCAGCTTCCGTTCAACATCACAAAACATCGATTAAATGGGATCAGGATGGGGTCGGGGATGCAACAGGAGCATTCTCTGAACCTGAGGGAAACCTTGCTAGGTTGCTCAGGCTTCTTGACCAAATGCCCAAGCATCCAGCAGTTCCGCTCACCTCAGTGTCGGCTCCACTCGGCCACTGGCTGGAAGCTCTAGGACTAAACAGAACTCTGAGGGCTGCAACTGGAACTATACAGGAGCCATGAGCTTGGCAGTCAAGGAAGGCAAACCTGCAGCTATCCTGGGAGGAGTGGTCCCTAACAGGGAGCTGGGGTACACCACAGCCTCCCCTATCTGACCCTTTCTTGGGAGGAGGCTGGCAGGGCACAGGTTCTGGCTCAACACCTCATAGCTCTTAACCACATCTTGCAGGGTGCTAAGGAGGCCTTGGGCCCCCTTAGGGGACACTGGGTTGTGGAAGGCCCTAGAAACAGTAAGTAGCCCACTTGCTCCCTGGAAGGGTAGCCTGCTGCCTACACACACTAGGCCTACCACTAGCCATTTCACCCTCTCCTCCAG
Seq C2 exon
GTCGTTGTGTCTCTCAGGCCAGCAGCAGAAGAGCAGGAAGCCCTGACCTGCGGGAGTTATAAATCGGCCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAGTGGGCTCAGAGGCAGGGGGTGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGGAAGGGCCTCGCCTCTGCCTCCCCACAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055003-Lrtm2:NM_172492:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: