HsaINT0097332 @ hg38
Intron Retention
Gene
ENSG00000166159 | LRTM2
Description
leucine rich repeats and transmembrane domains 2 [Source:HGNC Symbol;Acc:HGNC:32443]
Coordinates
chr12:1820529-1827594:+
Coord C1 exon
chr12:1820529-1820814
Coord A exon
chr12:1820815-1827409
Coord C2 exon
chr12:1827410-1827594
Length
6595 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
TCCCTGTCTCTTCCTAGCAGCTG
3' ss Score
8.66
Exon sequences
Seq C1 exon
CCCTTTCTTCCCTCTCTCCTCTCTCTCTCTCCCTCCATCCCTCTCTTTCCTTCTCAGTTTGTGACTGACCCAGCAGCCCCGTCCCCCGTCTGCCACAAGCAGTCCACCTCCTGGTGCTGTGTGCTGCGTGCCAGCCGCTGCTCCCGCTGAGTGGAGACTCTGGCACCAGTGCCCACTGCGCTCTGCCTGCCGGTGGTGTCTGGATTTCTATAGGAATCCCAGGAGGGTCTTACTGGAGGGTTGAGAGCCACCTGATTGAAGGCGTTTGCAGTCAGAGTAAAGACGG
Seq A exon
GTGAGTACCGAGTGGCTGGTAGGAAGGAATGGAGGGTTGGTGGGGACAGGGGGTGGTCGGGGCATGGGAAGTGGGCACCGGCCATCTCTGCCCTGCAGGAATAGCTGCAGTTGCTTCCTACCTGCAGGCAATTGCTGGGGCCGAAGAAGCTGCTCGGGCTCAGGCACCTGAGCATCCCAAAGGTGCACGACACTGGGAACTCTGAGCCCACAGTGCTGGGGACAAGAGCTGTGGATTCTGCTGGGAAGTGGGGAGGAGGGCAGCGCTGGCGCCAGATGACAGTCCCGGGTGGCATAGAAACCGGTCCCTGCAGCATGGGAGAAGCAGCCAAGAGCCTTGTGCTGTCGTTGTGCCCGGCTCTGCACAGACAGCCCCAAGAAACTCGGGGGTCATGGGAAGCGGTTGGGATGGCAGTCAGGTGCTGGGGACAGGGCCAGGTCAGAGGAAGGCTTGGGGTGGAGGGTGGCAGGGAGGAGGTCCTGGATGTCAGAGGCATGGGCACAGACCCAGGTCCTGGGCCTCCCTATAGCTTGCCTGCAGGTGGCTGTCCTTGGACAAGGGTGTGGAGGAACCCTCCCCCAGATGAGCATGGGCCCACTCAGCTGTGCATGAAGCCTCCCTGGTGAGGGTGAGGCTGGGAGTGGGCAGGAGAGAGAAGTATCGCAGCCCTTCCCTGCTAGCCCAAGGGCAAGACAGGAGAACCAGGCCCGCGAGAACCTGCTGGGGTGTCCCGCAGCTGTGCACCCAGCCGTCCATCTGCAAATGGGTCAGGGAGCCTTAGTGGGGGCTGGACACTGAGCTTGGGTGGGGGGTACACAGCGGGGCCAGGCCTGCCTGGCTTCTTGACCCACACAGGGGGCATGGACACCCTGAGTAGAGCGGGACAGTTGCTCTCAATCCCCCAGACCCATTTGGACAGTGCTGGAGAGAGGAGCAGCCTGACCAGGAGTCGGAAGTTCACATTCCTGCACCTCCCTGCAGGTCTGGGGCTGGGTTCCAGTTGGCGGCCCTGTCTCTCCCCCACCCCCAAGCTGTCCACATTTCTGGGGGGTGTTGGCACCCGGCTGTCAGGGCTACTTGGGCAGTGTCTCTTTGTGACTCAGATGACACCCCTGCAGCTTAGATAACTGCCTCAGGTGGGGGCGGGGAGGGAGCCGAGCACGTGGAGCTGAGGCGGGGGAAGTCCAGCTGGTAGGGAAACCCGACAGCAGCTTCCGAGCTGCCAAGAAGAGCCCAGCTTTTCCCACCCCCACCTCCCCACCGGCAGAAAGAAAGTCTCAGCACTGCCAAAAGAGGGAGACCAGGAAAGCCAGGCCCGCGGGGAGGGGTAAGGAGAGAGGCTGCTTAAGCAGCCGATCTGGTGTCTTTGGGGTTTGACAGAAGCTTGTCTGGGCCCACGAGGAGCAAACTCTGCTCCCGTTTCCCAGGCACCAGAGCCCAGGGGCCGCCTCTGGGCTGCTATGGCCTCAGTGGGCAGTGTAGGAAGGAGGAGGGGATGGCATGTATGTGATGGTTGGGGGTGTCTGGGAGTTCTGGGGGTGGGCAGAGGAGAAAGGAGCCAGCATAGAGGCTGTCTGCCCCTCTGGTCTTCCTCCTTTTTCCCCCAGCCAAGCCTCCTGTGCCCTGCCTGGGAATACCACCCTGAGCCCAGCCCCAGGGACACCACCCTGAGCCCGGCCCCAGGGCCCAGTGGACACCTTAGCCTCCTTCATGTCAGGGACCAGCTCCCATGAGGGGCCACTCAGGAGGCTTCTCTGTTCTGCTTCCCAGAGGGTCTGTTTGAGATTGAGAATATTTGACAAGGAAACGGGGGTGCAGGAGGCTGGGGGTGAGGATGGGGCATGTGTTTTAAAATGAACCAGGAGGGTATATGGCTGTTCCAAGTACAAATATAGAGATTTTTAAAACCTGGTTCCTTGCTGCCTGGGCAGTGTGTGTGATGGGGGTGATGGGCAGCTGTCCTAGAGGGCCTGGGTGCCCAGACAGGCAGCGGTAGGCGGAGCCCAGCCTAGACGGCTGTGGCAGCCTCCCCTGCGTCCTGGCCACATGGAATCTCGGGCCGTCTTTGGCCCGGGGCTCTGGCTGGCCACTCTCCGGGCTCCCTCTCAGCCTTCCTGGGGTTGGTGGAAGGGCACGGCCCCTGCAGGCCCAGGGTGTGGGCCCAGTCGTGGCTCTGCTTCTCTCTGGCCTTCTGCAGAGTGAAGGGGGCGGCAGAGTAGGCTGCAAATGCCCCCTTTACCCCTGAGTTCTGTGACTCTTCCATGCTGAGGGGTATGGACTCTTGACCAAGGGGAGATGCCAGGGGAGTGGGCACACCCTAGGGCTAGTGTGATGGCCCAGGAGTCAGGAATTCAGAGGTGGAGGCCCGATGGGCATTATCTGGCTGTGTGTCTTGGATGCTTGATGTGGAGGGATAGACATGCGCAGAAGCCTGAGAGGAAGGGTGCGGACACCAGGTCTGTGGTGAGTGTGCTGGAGGTTTCTAGCTAGAGTCTGAGACTGATTAATTAACCTCCATCTGAGGAGAAATGGAAGGGGCAGGTGCATGGAGCGGTCCAGGCTCCTGCCGTCCCAACCTAGCTCTCTGCAGTGAGTGAGTGCGTGCGGCTGTTCCGTGCTCTGAGGGGGCCGAGTGGGGTGCTAGCAGGGAGGCAGCTCCCACTCCCAGTCTCCTGGGGTGGCTACAGCCCACTCAGCTCCGCATGTGGAACCCCCTGCTCCTACTGGGGCCTCCTGCTCCCCCATGGCCTCCCCAGCCTTGGCTCCCCCAGAACAGAGCTCCGGCCTACTCCCCTCACCTCAGCACACAACCCCCAGCCAGAAAGGTTTCTAGAAAGCCCCCCACCTTCCGTAAGATCTTGGCCTCCCAGGACTTCAAGAAGAGAGGCTGGGAAGAGGAGAACCTGTCTTGCTTGCATCTCAGTCCAGCAAGTCACAAAGCCTGTTCCTTCATCAGGGCAATGGGGACAAAAACAGCTGCCTTCTCAGCTCCAGCGGGAGTGGATCAGGCAATGCCGTGGACACTGCAGAGGACCATTCAGAGGAAAGGCGGCATCTTCCTTTCCTACCTCTGCCTTTCCTGTACAAGTAACCCCCACGTGTAAGCAGACAGACAACTGAGTTAGGAGCCAGAGAGCTCGGGCTCAGAGCCATATGATTCCATTTGCCTAACTTTAGGTGAGTTATTTCATTTCTGGTGCCTCAGTTTCCCCCATCTGCAAAATGATAGTAACAAGAACACTAACCTCAGAGAGTTGTTACAAGGATTCAGAAAACTACACAGGTTTGTGACTGTGGTAATTTTTTTCTCCCCAGGTCCCAGTTAGCTTCTCAGTGGGTCCTGGAGGCTCAGGGACAGGCCAGCATGGTCTCCTCGGTGGCCGTTTGCCCTGCTGAGAGGTGCCCGGCCTAGTCGTATCAAACTCAAATATGCATGAAAATCCCCTGGGGATCTTGTTAAAATGCGGATTCTGACTCAGTCATTCTGGATGGGCCCTGAGACTACCTTCCTACAAGGCTCCCAAGCTAGACCAATGCCGCTGGTCCATGGACCACACTTTGAGTTGCAATGGTCTACACTCAAAGCCCCATGTTTCTGGCCCTCCAGAGTTCCTCATTTGACTGCTTTGAGCTCTTCAGCCCCATTCTCCAATCCTGGCTCTCTCTGGAAGGGAGGCCAGGGACTCCGTGGAGGCCTGGCCCCTTATCTTTGGCCTCCCTGTCTCTAGGACTGGGTTAGGAGCAGGCCCAGCATCCAGAGTGGATGAGGCCATGGGACTTGCAGACAGGAGATCTCGCTGTCCCCCATGCTGCACCCTGGGTAGGGACTTCCCTCCCAGACTGTGAATTCATTTCAGCAGCTGTCAGTGCCTGCTGCGGCAGCTGCTCTCCAAGCTTCCCAATGTAGGTCACCCCCTTTCCTTAAGGAGGCTCCACTCTTCTGGGGGTGGGAAGGGTCCTTTGGATGGAGGCGTGTTGGTAGGCAGAGGCTAAGGAACTAGGGAGTGCTGGCTGCAGCCCCACCTCTCTCTAGGAGTCCCTCTGTGGTGCCACACACATATGACTGGTGTTCCCTGCAAGCTGCGCTATTTTTCCTGCTCTTGGGAAGGCCCTGGTGTCCAGGAGGAAGCCCAAGGGACCCAGGGAGGCAGGATTAGCTGCTAAGAGAGCACAGGGCATATCCGCATGAACCTGGGGGCCTTGTTTTCATCACATTTCTCTAAACAATACCAGGATCAACAGTGTCCTGCCACCTTGCAAGACAACACCTGTGGGTCTGCATTGTGGGGACTTGCCGGACTTGTGCAGGTGACATCCCATTCGAGGCTGAAGATGGGACCTCCAGACCTGCACAAGAGGCCGCCTTCACCAGCCTGTTTGCTGGTTAACTCCTGGGCTCACAGTGTGGGAGACACTGAGGGATGGGAGAGGGTGAGGTGGGATGCAAAAGAGGAGCCTATCCAGGGGAGGCAGAAGCCTTAGGTGGAAACTGGCCTGAGCTTGGGTGGGAGGGCTTCTCCACTACCTATCTGCCTGCGGCAAGCCAGAAGGAGTGGGAGCAGACACCTGGATGGGGAATCCGGCCTCAACATGGGCCCTGGGCAGAGGAGGTGTCTTATGGGTTAGGGACTGCTCTGCAGGGGTTCTCTCTAGACCTTAGTTCCAGGCTGGAGGCGGCTTACACATCTGTCTGTTGGGGGCATTTGGGAACTTAGAGGCATCTCACTCAGCTGCCTGAGTGTTGGCATTTGAGAAGTGCTGGAGTGCTGCCAGCCAGGTGCGTGTGTGCATGTGTGCAAGCATGTGGGCACATGTATGTTAGCACATACCTAGCTGCACAGCTCTCTGTGGGTGTGTGTTTGCATCACGTGCTGTGTACAGAGCTCCAAGCACAGGTCTGGGAGGCCTGTGTGTGTGCCCTGCTCTGTGCACACGTAAGTATCTCCCTGAAAGGGCCACTGCTGGGTGACAGTCGCCAGGGAGTGATGAGCAGCCTGCAGCCTGGCTCTGAAACCTGCAATCCAGTCCCGGACTTACCATGTGACCTTGGACAAGTGATCAACATCTCTGCCTTGGGTGGCCGTGGACTGTGAGCTCTTGATATGGACATTCTTGACTGAGTAAGAGAGATTGTGCTGAAGGTCAGGGCTCGAGGGACAGAGAGCGTGCACGCTGCTGTTTGAAGGCAGGCCTGCGAGGGCCGTAGGTGTGGGGCAGAAATACATAGACTCCACAGGCCCGGGGTGCTCAGGAATGAGAAACAACCTCACAGGGGAGGTTGGTGGGATCGGGAAAGAAAGCCGTCACAATAGACCTGCTGCTGACACCCCTCTCCTCTGGAGGGAGGAACTGCTGCTCCCTCACGCCTGTACTGGGCTCAAGTCCGAGCTAGGAGCAGGAGCCTCTGCCTGAATTTCCATGGTGATGGGCACTGGGTGTGTCAACTCTCTTCCCTTCACTAGATTGATCCTCATAGAAACTCCACCAAGCAGGTATTGCGGTCACCATTTCTAGACAGAAAGAAGCTGAGGCCCAGAGGCTTTAAGCAGTTTGTTTAAAGAACGGACCAGAGATTTGAACCCAGAGCCCCCCCCCCCCCCCCGCCAACTGGCACCAGGAGCCCACTGGAGCCTGGCCTTGAGACAGTGGTTAGAGAACCATGACAGCACCACGCTCAGGGGCTCCTCCACCCCTCATGCCAGGGACGTGGGTCCTCCTGAAGGCTGCATGGGCACCTGGGCTGCCTGCAATCCCACATCTGTGCCCAGTCTTGTGACCCCTCTGCCAACGCCTGCGGGGCCTTCGGCAGACTGGCACCCTCGCTGCGTGGGGGAAGGGGAGGAAAGACAGCCGAGAGGGCGGCACTCCGCTCCTCAGCAGGCTGCCCTTGCCGGGGGCAGAGCCGACTGTCCTGTTCTAACTGAGCACTGCTGTGGCCGCCTGAGGAGCACCCAAGGAGGGAGGGGCCGAGGGGACCAGAGGGGAGAAGATGGGGGCAACAGGGTTTGCAGCAGGACCCTAATGCCCGAGGGGAAACCTGCACAGACAGGCCAAGATTCTGGGCTCAGCACTGAAGCTTCTCGGCAGCTCCATCCACCTCTGGGCCTGTCTTTTTCACTCTGATATTGTCTCCTGGGCTCCCAGAATTCCATAGGCCCATGGGGGCAGGGAGAGGGAGGCTGCAACCAGGAATTACCCAGGGACAAATCTGGCAACCAAGGAAGGTCAGAGGCTGGGAGCCGCCTGGAGCAGTGGGCTGACGCAGGGAGCCCGTGGAGGGCGAAGGAGAGGGGTGCGGGCATCCTCCCTCCCTCCCTGCCCATCCCCGCCCTTGCCAGCTGCAGCAGGTAAACACATGCCAGTCCCCTGTCCCCCTCTCTGATGGGCTGGCAGCCTGGGCCTCCCATCTGGAAGGAAGTGGAGACCCCAGCACACAGCCTGTGTCCCAGTTGGGAGACACTGGGGGGGGCAGACCCTAGAAAGGGTAAGTGCCCCCTTGTCCCCCGCGAAGGAAGCCTGCTCCTGCGCCCTGGCTGCCTCAGCGCCCCTACTCTGCGTTCTCACCTCTCCTTGTGTCCCTGTCTCTTCCTAGCAG
Seq C2 exon
CTGCCGCAGCATGAACCCCTGAGCTGATGAGTCTTATTATAGCCCGGCTGGCGGAAGACAGAGTGCTGCTATTCACCTCTGCGTGGGCGTCGGTGGTGCAGGGGGAAGCAGCAGGCCATCCAGCGGCTCACACCCTACGCGGCTGCAGCTGCCAAGGGCCTGGCCCCTGCCTCCCTCGGGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166159:ENST00000299194:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development