RnoINT0087340 @ rn6
Intron Retention
Gene
ENSRNOG00000007508 | Lrtm2
Description
leucine-rich repeats and transmembrane domains 2 [Source:RGD Symbol;Acc:1587001]
Coordinates
chr4:151384812-151390263:-
Coord C1 exon
chr4:151390006-151390263
Coord A exon
chr4:151385007-151390005
Coord C2 exon
chr4:151384812-151385006
Length
4999 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATTTTACCCTCTCTTCTAGGTC
3' ss Score
11.86
Exon sequences
Seq C1 exon
GAGCACGCGCGCTCTGATCCTTTTGCCTCTCCCCCTCTTCGGTCTGTCTTCCTCCCGCCCTCCCTCTTTCGCTTCAGTTTGTCGCTGACCCCACAGCCCCCTCCCCGGCAGTGGCAGCTCAGCCTGCGGGTCCGCCTCTTTTACAGGCGCTGTCCAGTCTCCCGCTGCCCTGAACCAGACTGAACATCCCCACGTTCTGCCTGCCAAGCTGCCCGTGTCCAGCTACCTGGTCTGAGCATCAGGTCCCATTGCAAAAAG
Seq A exon
GTGAGTTGCGAGCGGCTTCTGGGAGAGAATGGGGTTGGCCCAAAAGAAGGGATGGCTTGGGTAGGGGAACTAGGGACCACCTGTCCTTGCACAATTAGCAGGGCTTTCTTCCCAGGGCAGTTGCCGAGGTGGGGTGGGGGAACCACTTAGGAGCAGATACCTGGGAAACCCAAAGATACAGAGCATTAGGAACTCTGACTCCTCAGTGCTGGGGACATAGCTGTGTATTCTGCTAAAGAGGGGGTGTGGAGGAGGGGACAGGGAGGAGAGCAATGCTGGTGCCACATGATGGCCCCGGGTAGCATGGAAATGTCCCTGCAGCAGGAGGAGCGGCAGCTATGGGAGGGGGAGACAGCTTGGGTGTTGGAAACAGGCTGGCATTCTGAGAGCCTTGAATGGGGGTGGAGGACCCACTGATTGAGGCAAAGGCTGGACCTTTATACCGGTCGCTCTGGGAGCTTGCTGGCCTTCAGGTAGCTGTCCTTGGACAAGGGTGCAAAGGAGCCCTTCCTAGTTGGAATAGTCTTTGCAGTCCTGATGGAGCCTCCCTGGTGGGGGTGTGGCTGGGAGTGAAGGAGGGGTGTCTGGTAGTTCTTCCTTACAAACCCAGGACTTGATTTTAGCACACTGGATGACCAGACAGGCCAGGAACCTGAGACGCTTAGGTGGTCCACCACTGCACAATGGCCTTTGCAGCAGGTGGGACAGATGCCTTCGGAGCACTGGGCACTCAGTGTAGGGGGCAGCATACAGAGAGGTCACAGTCACCTGGCTGCCTGGCTCACATGGGCATGGATGCCCGACTAGGAGCAGGACCTTGGTTTTCAGGAGCCCCAGGCCCATTTCATAACGCTGGATTCTGCCCAGGAATCTGCAGTTCAAATTCCTGTATGGCCGGCAGGTCTGGGACTGGGCTCTGATTGGTTGCTCAGCCTCCCACCCCCCAGCTGTCTGCATTCCAGGGTGGTGGTGGGGATGTTGGCACCAGGCTGCCAGGGTTTGTTGGGCATTGCCTTGTGTGACTCAGATTGACAGGCCCACAGCTTAGATAACTACAGCAGGTGGGGGGAGGGGAAGGAGCCAGCATGTGGCACTGGGCGGGGGAAGTCCAGCTGGTAGGGAAATCCAACATCAGCTTCCAAGCTGCCAAGAAGAGCCCAGCGCTCCCACCCCCACCTTCCCACCACAGGAGGGCTCTGGCTCTGCCAGAAGAGGGAGACGGGGAAAACCAAGCAGGGCAGGGAAAGAGGCGACTTCTTAAGCCCCCTAGCTGTGTTCTTTGAGGTTTGGCTAGAGGATGTGTCTGTACTCAGGAGAGGGTCACCCTCTTCTCTTTTTCCAAGTGTCAAGACCCAGAGCCAGGGTCTTGCTTTCACCAGGTGTGTGGCAAAGGAGGGAGCTCGAATGGGTGATTGTGTGTACAAGGTTGGGAAGACGGGGGAGCCAGGGTGAGGCTTTGGTGGTGGGGGAGTGATTTTTCTTGGCTCTTGCCCAGGGAGGCATTTGAATGGTGGGAGCCTCCCAGGTCCGCAGTGGCTTCTTCAGCTTCACAGAGCAACCCCTTGTGTGTAGGGTTTCCTTCCTACTCTGCTTTCCAAGGTTCTGTCAGAGGCAGGGAGAACTGGACAAGGAAAGTGGCTCAAGAAGCTGGTGGGGAGAAGACAGGGTGCTGAGAGGGACCTGGAGGAAGGGTGTGCGGCTGTTCCAAGCAGAAGGGGTTTAGAAACTGCTTCACTGGACAGTATGGACTCAGAGGTGACTGACAGGGGGCAGATGTGGGGGTATTTTCTAGAAGGGCCTCGTGACCAGACAGGTGACAACAGCTCAGGGGACGTTTCAGTTTCCCGTGTTCTGGGCTACCAGGAATTCCAGTTGCCTAGACTAGATGTCCAGACTCCCTGGAAGTCCTCTAAGATAGGACAGGATGCCTTGCAGGCCACTGGCTAGCCTTGCGCTTCCCTGAAGAACCAATCGGGTAGAGCACTCTGCTCTACCCTTTCTGCTTCCCTCTGCGGGTGCATAGAGATGGGGGAGGGGATGCAGGAGCCTTGACCCAGGAGAGACATCCTGGGGACGCACATGAATGGGGCCAGGAATCAGGAGCCGAGGGCACTCCCTGCTGCACACTGTTAATACCTGATTGGAGGGGCACTAAGAAGGAGCTCAGAGGAATCTTGTGAATCTCAGGCCTGGGCTGAGGTGTTTGTTTTTTTTTTTTGTTTTTTTTTTTTCTTTTCTTTTTTTGGTTTTTAGCTGAGTGTAAGCCCACATCATGGGGAGAGTAGGCCTCCATCTGTGGGAGAAACTGGAGGGCAGGTGCACTCTGTCATCCTAACCTCAATGTTCCTCAAGCAAGCCTAGCTGGCTGCTCCAAGCTGGGGGAGGGGGCAGCTAGGGTTCCAGGGGAAACAGCTCCCACACCCTATCAGTAGTAGGTACAGCAGCCATTGAGCCAGCAGGAACATGTGAGGCCTCTGGCTGCCCCTGCTCCTGCCTCACCGGTCTGCTGTTCCCACCCTCCACTCCCCACATCCCCTCGCTCCCAGCCCTGAGGGATTTTCTTGGTTCCTTCCAGCCTCTGGGTAGGAAGGGGACCGGAATGGCTGTTTGCTCAGACACTGATGAGAGATGCCTTATAAACTGTGAAGTTCTGTGTGGATGAGGGCTGTATGTCTCTGTTTCTGAAGCAGCCTTTACCTGAGGGATAGACAGGGCTGAGGCCGGAACCTGGGAGGGCCACCGAGTCAGAAGTTTTGTGGGCAGGGAATGGGTCCAATCGATATTCTTCCGTTCGCCTAACCTTTTCCATGCCTCAGTTTCCCTACGATGCTGATAACGACTCTAACCTTACTGAACTGTACGGGCATCAAGAACACAGTGCTGTGTTGGTCTTCGACTGTGGCCAATAGCATCTCCCCATGTAAAAGGTTTGTAGGAGGTCCTCAGGTTGGTGCCCTTGTCTTGGCCTGCCTTAGGCAAGGCTAATTAAGGCTCTGAGTGAGCCCTGGACTTATTTTTCCTTTGAATCTGCCATTTTCTGTCCCAGCTCCTCCAGGCTAGCCGTATGCAGCCTATGCTGTCCCCAGTTGCCTGACCTAGAGTTGTACCAGCATGGCCTTCTGGGTAGCTGTTAGACCCAGGCTGAGTCTGCTGGCCTGGGGTGATTTTGGTGGTGTGGGTCCTGAGAGTTAGCATTTCTGAAAGGTTCCAGGCTAGCTGATCTTTCTAGTCCATCAGAGTCAAAACTGCATGTTTCTGGTTTGGGAGGTCTAAAGGTTGGTCGATCCTAGCTTATCAGCTCCATTCTCCAACCTGAGTCCAGGGATCCTCCTGGGCCCAGCCTTGCCCCACTTTGTTCTCTTGTTTCTGGGGATAAGGTAAAATACAGGTTAATGTTGGGAGCGGGTCCTGAAGGTGGGGGTGGAGCGTGGGGGGTAGGGGTTGTGGTGGTGGGGACAGCTTTCCTTCAAGTAGGACCTCCAACTCTGTTCTGTCTCCCACTCCCACAGAGTGTTGATTTATTCCAGCAGTCGGCCAGGCCTGCTGCAGCAGCTGTCCTCTGCCTCCCAATGTAGGTCACCCCTTTCCTGAGGAGTCTCTGCGTTTCAGGGGCAGAAGGGTCTTTTTGCTGGGAGGTGTGTGAGTGGACCTGGAGTAGAAAGGCTAGGAAGTGCCCCTCCCCCACGTCTCTCCAAGCATCAGGATGGCACTGACATTAATCAGAGGAGACAGTCAGCTACCTAGACAGAGCGGGGGGGCAGAAGGGTCTTTTTGCTGGGAGGTGTGTGAGTGGACCTGGAGTAGAAAGGCTAGGAAGTGCCCCTCCCCCACGTCTCTCCAAGCATCAGGATGGCACTGACATTAATCAGAGGAGACAGTCAGCTACCTAGACAGAGCGGGGGGTATCTTCTCCTAGACTCCTGGCCTCCTTTCTCCAGAGGATCCCAGTCACCAGAGTCCTTTCGGCTACTTCAGTAGACAGCAACCCCACCCCCCCATTCCCACCCCCATCTGCACTGTTTGCTCATGGCCCCTTGGCATCACAAGCAAGTGGCACTGAGGGGGCAAAATGGGAGGGCGAACCTTCCTGGAACCTCAGGTGGAGTCAACCTGAAGGAGGCTTCTCCATGGCCTGTCCTCCTGTGGGAGGGCACAGGCATGGGAGCAGAAGGTGCCTGGGCCTTCATCAATCCCTGGGCCTGAACAGAAATCCTGGCCTGGCTTTAAGGCTGCTTCGTGGGGTTCTGGGCAGCTCTTCCTTCCAGGCTGGGAGTGCCCCTGTGCCTCCCTGCCCTGGCTATGCTGGGACCATGAGGCATCCTTTTGCTGCCTGAATGATAGTGTCTGAGTGGTGCTGGAAAGCTGCCAGCAAGGCATGTTTATATGTGTGGGTGTGCATTCATGTGCCTACGTATCCCAGTACATGCCTAGCTCCTTGTGTGTGGGAGTGCATGTGTGCAGGCACGTGTGTTATGATACGCTTAGTTTTGTGTCTTTGTATGGGCCTACCTCGCTCTGCTCGAAGGTTGTGTCTGGGAGCTCTGTGCACACTCCAGTGTTTTCCCCACTAGGGCCCCTGCAGGGTGACAGCCATCAGGAAGTGGGTAAACAGCCTGACTCAGAAGGCTGTGACCCATCCTGACTTACCATGTAACCTTGGCAAGCCAGTTAGGATATCTGTGCATTTGGGTGGCTGTAGCCTGCTGAAGTGGTCCCAGAGAACAGGGTCCTTTGGCCCCTAAAAGGGAGCTGGGGTATACCACAGCCTTTGGTATCTGACCCTATCCTGGGAGGAGGAGGCTGGCAGGGTGCGGGTTCCGGCTTGTCATTTCAAAGCTCTTAACCACATCTAGCAGGGTGCTCAGGAGGCCTTGGGCTCCTTTAGGGGGCACTCAGTTGTGGAAGGCCCTAGAAAAAGTAAGCAGTCCACTTGTCCCGGGGAAGAGTAGCCTGATGCCTACACTTGGCCTACTGCTAGCCATTTTACCCTCTCTTCTAG
Seq C2 exon
GTCTTCCTGTCTCCGGGGCCAGCAGCAGAAGAGCAGGAACCCCTGAGCTGCCGCAGTTACCGATTGGCCAGCTGGCAGAAGTCCAAGCTTGTAATTCTCCCCAAGGTGGGCAGGGGGCAGTGAAGCAACTCACACCCTACCTGTCGGCAGGAACTAGGAAGGGAAGGGCCGGGCCTCTGCCTCCCCACAGCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007508:ENSRNOT00000010238:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]