MmuINT1022488 @ mm10
Intron Retention
Gene
ENSMUSG00000055003 | Lrtm2
Description
leucine-rich repeats and transmembrane domains 2 [Source:MGI Symbol;Acc:MGI:2141485]
Coordinates
chr6:119323649-119330766:-
Coord C1 exon
chr6:119330495-119330766
Coord A exon
chr6:119324409-119330494
Coord C2 exon
chr6:119323649-119324408
Length
6086 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CATTTCACCCTCTCCTCCAGGTC
3' ss Score
10.62
Exon sequences
Seq C1 exon
TTGCTTGCTGTTGAGCACGCGCGCTCTGATCCTTCTACCTCTCCCCCTCTTCGGTCTGTCTTCCTCCCGCCCTCCCTCTTTCGCTTCAGTTTGTCGCTGACCCCGCAGCCCCCTCCCCGGCAGCGGCAGCTCAGCCTGCGGGTCCGCCTCCTTCACAGGCGCTGCCCAGTCTCCCGCTGCCCTGAACCAGACCGGACATCCCTGCGTTCTGCCTGCCAAGCTGCCCGTGTGTCCGGCTACCTGGTCTGAGCATCAGGTCCCGGTGCAAAAAG
Seq A exon
GTGAGTTGTGAGCGGCTTCTGGGAGAGAATGGGGTTGGCGCAAAGGGCTTGGGTATGGGAACTAGGGACCACCTGTCCCTGCACGATGATCAGGGCTTTCTTCCCAGGGCAGTTGCTGAGGTGGGGTGGGGGAACCACTTAGGACCAGATAACCTGGGCAACCCAAAGGTACAGAGCATTAGGAACTCTGACTCCTTAGTGCTGGGGACATAGCGGTGTATTCTGCTAAGGAGGGGGTATGGAGGAGGGGACAGGGAGGAGAGCAGTGCTGGTGCCACATGATGGCCCCGGGTAGCATGGAAATGTCCCTGCAGCGGGAGGAGCGGCAGCTATGGGAGGGGGAGACAGCTTGGGTGTTGGAAACAGGCTGGCATTCTGAGAGGCCTGAGTGAGGGTGGAGGGTGGAGGACCCACTGAGTGAGGAGGCGCAGGCTGGACCTTTATACCAGTTGCTCTTGCTGGCCTTGCTGGCCCCGAGGTAGCTGTCCTTGAACAAGGGTGCAAAGGAGCCCTTCCTAGTTGGAATAGTCTTTGCAGTCCTGATAGAGCCTCCTTGGTGGGGGTGTGGCTGGGAGTGAAGGAGGGGTGTCTGGTAGTTCTTCCTTACAAACCCAGGCCTTGATTTTTAGCACACTAGATGGCCAAACAAACCAGGAGCCCGAGATGCTTAGGTGGTCCACCACTGCATAATGCCCTTTGCAGCAGGTGGGTCAGATGCCTTCCAAGCCCCGGGTGCTTAGTGTAGGGGGCAGCGTACAGCGAGGTCACATTCACCTGCTGCCTGGCTCATATGGGCATGGATGGCCAACTCGGAGCAGGACACTGCTTCTCAGGAGCCCCAGGCCCATTTCATAACGCTGAATTCTGCCCAGGAATCTGCAGTTCAAATTCCTGTATGGCCGGCAGGTCTGGGACTGGGCTCTGATTGGTTGCTCTGCCTCCCACCCCCAGCTGTCTGCATTCCAGGGTGGTGGTGGGGATGTTGGCACCAGGCTGCCAGGGTTTGTTGGGCATTGCCTTGTGTGACTCAGATTGACAGGCCCACAGCTTAGATAACTACAGCAGGTGGGGGGAGGGGAAGGAGCCAGCATGTGGCGCTGGGCGGGGGAAGTCCAGCTGGTAGGGAAATCCAACATCAGCTTCCAAGCTGCCAAGAAGAGCCCAGCGCTCCCACCCCCACCTTCCCACTGCAGGAGGGCTCCGGCTCTGCCAGAAGAGGGAGACAGGAAAACCAGGCAGGACAGGCAAAGAGACGGGCTTCTTAAGCCACCCCCCCCCCCAGCTGTGTTCTTTGAGGTTTGGCTAGAGGATGTGTCTGCGCTCAGGACAAGCTTACCCTAGTCTCATTTTCCAAGTGCCAAGACCCAGAGTCAGGGTCTTGCTTTAGTCAGGTGGGTGGCAAAGGAAGGCGCTGGAATGGGTGATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGCTGGGAAGAGCGGGGAGCCAGGATGAGGCTTGGGTGTGGAGTGAGTGATCTTCCTTGGCACCTGCCCAGGGAGGCAGTTGAATGGTGGGAGCCTCCCGGGTCCTCAATGGCTTCTTCAGCGGCACAGAGCAACCCCGTGTGTGTTGGGTTTCCTTCCTACTCTGCTTTCCAAGGTTTCTTTCTGTCAGAGACAGGAAGAATTTCACAAGGAAAGTGGCTCAAGAAGCTGGCGGGGATAAGACAGCGTACTGAGAGGAACCTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAATGAGAGGAACCTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAATGAGAGGAATTTGGAGGAAGGGCGTGTGGCTGGTCCAAGCAGAAGGGGTTTAGAAACTGCTTCACAGCGCAGCATGTGCTTAGGGGTGACTGACAGGGGGCAGAGGTGGGGGCATTTACTAGAAGGGAGGGCCTCATGGCCAGACAAGTGACAGCAGCTCAGGGGACATTTCAGTTTCCCGTGTTCCGGGCTACCAGGAATTCCAATTGCCTAGACCAGATGTCCAGACTCCCTGGAAGTCCTCTAAGATGGGACAAGATGACTCGCAGGCCACTCGCTAGCCTAGCCTTGAGATTCCTTGAAGAATAAATCGGGTAGACCATGCAAGCCCTTTCTGCTTCCCCTCTGTAGGTGTATAGAGCTGGGGGCAAGGAGGGGAGGATGCAGGAGACCTCCTGGGAAGATAGACACAGCATGGGGGCCCAGGAATCAGGAGCGGAGGACACTCCCTGATGCATGTTGCAAACACTTGATTTGAGGGTGCTAAGAAGGAATCATGTGGATCCCAGGCCTGGGGTGAGGTGGTTTTTTTTTTGGTGTTTAGCTGAGTGTGAGCCCAGATCATGGGGAGAGTAGGCCTCCATCTGTGGGAGAAACTGGAGGGCAGGTGTACTCTGTCATTCTAGCCTCAATGTTCTGCAAGCCTGGCTGGCTGCTCCAAGCTGGGGGAGGGGGCAGCTCCCACACCCTCTCAGTAGTGGGTACAGCAGCCATTGGGTCAGCAGGACCACGTGGAAGCTCCAGCTGCCCCCTGCTCCTGCCTCACCTGTCTGCTGCGCCAATCCTCCACTCCCCAACTGCCTCACCGCATCCCCCAGGTCCCAGCCCGGAGAGGTTTGCTGGATTTCTTCCAACCTATGGGTAGGATGGGGACAGGGCTGGTTCTTGGCTCAGATGTGATGAGGAGATGGATGCCTTATAAACTGTAAAGTTCTATATGGATGGGGGGCTATGTCTCTGTTTCTGAATCAACCTTTACATGAGGGGTAGGGCTGAGGCAGGAACTTGTGAGGGCAACTGAGTCAAAAATTTTGTGGACAGAAAACAGGTACAGGTCCAATTGACGACATTCTTCCATTTTCCTAACCTTTTCCATGCCTCAGTTTCCCTATGATGTTGCTAAAGACACCTTACTGAACTGTATGAGGATGAAGAACGTAGCATTGTGTAGCTCTCTGTCTGTGGCTGTTAGCATCTCCCCATGTTAAAAGCTTGTATGAGGCCCTCGGGTTGGTGCCCTTGTCTTGGCCTGACTTAGGCAAGGTTAGTTAAGGTTCTGGGTGAGCTCTAGACTCATTTTTCCTTAAAATCTGCCATTTCCTGTCGCAGCTTCTCTAGGCTAACTGTATGCAGCCCATGCTGTCCCCACTTGCCTGACCTAGAGTTATACCAGCATGGCTTTCTGGGTAGCTGTTAGGCCCTGGCTCAATCTGCTGGCCTGTACTTCTCAATCTTGAATATGTCCCCAAATTGCCTGGGATTTTGTTGTCTGTGCGGCACTTGAGATTTAGCATTTCTGAAGGGTTCCAGGCTAGCTGATCTGATTAGCCCATCGGAGTCAAAACTGTAGGTTTCTGGTTTGGGAGGTTCAAAGGTTGGTCAGTCCTAGCTTATCAACCCCGTTCTCCAACCTGAGTCCAGGGATCATGCTGAGCCCAGCCTTGTCCCTTTGGTCTGTTTCTGGGGATAAGGTAAAATACAGGTTAGTTCTGGGTGCAGGTCCTGCAGATGAAGGTGGGGTGGGGGTGGGGAGTGGGGAAGGGGTGAAGACAGTTTCTTTCCCTCAAGTAGGACCTCCAACTCCATTCTGCCTCCCACTCCCACAGAGTGTTAATTTATTCCAGCAGTTGGCCAGTGCCTGCTGCAGCAGCTGTCCTCTGCCTCCCAATGTAGGTCACCCCTTTCCTGAGGAGTCTCTGCGGTTCAGGGCCAGAAGGGTCTTTTGCTGGGAGGTGTGTGAGTGGACTTGGGGTGGAAAGGCTTAGGAAGCGCCCCTCCCCCACATCTCTCCAAGGATCAGGATGGCATTGACATCAATCAGAGGAGACAGATCAGCTACCTAGGCAGAGCGGGGGCGGGGCGGGGGCGGGGCGGGGGCCAGGGGCATCTTCTCCTAGACTCCTGGCCTCTTTTCTCCAGAGGATCTCAGCCACCAGAGTCCTTTCTGCTGCTTCAGTAGACAACAAACAGCCTGGCCTGCACTGTTGGCTCACGGTCCCTGGGCATCATAAGCACTGGGGTCCTGAGGGGGGGAAATGGGAGGAAGAACCTGGGAACCTCAGGTGGAGGTCAGCCTGGAGGAGGCTTCTCCACAGCCTGTCCCACAGACATGGCCTGGGTCTCCACCGATCCTTGGACCTGAAGAAAAAAGCTGTCCTGGCTTTAAGGCTGCCTCATGGGGTTCTCAGCAGATCTTCCTTCCAGGCCGGAAGTGCCCCTGTACCACCTGCTGGGGCTATGCGGGGACCATGAGGCATCCTATCCTTTTGCTGCCTCATGAATGATGGCAGCTAAGTGGTGCTGGAGTACTGCCAGCAAGGCATGTGTCTGTGTGTGGGTGTGCATGCATGTACGTGCCTACGTACATGCCTAGCGACTTATGTGTGGGAGTGCATGTGTGTTATGATACACTCAGTTGTGTGTCTTTGTATGGGACTACCCCATTCTGCTTCAAGGCTGTGTCTGGGAGCTCTGTGCACACACAAGTGTCTCCCTACTAGGGCCCCTGCAGGGTGACAGCCCTGAGGAAGTGGGTAAACAGCCTGACTCAGAAGCCTGTGACCCACCCTGACTGACCATGTAACCTTGGCAAGCTGTTATGATATCTGTGCATTTGGGTGCTGCAGCCGGCTCGCTATTTAACAGGTACTGTGACTGTGGTTTGGCTGTTGCTTCGAAGGTCAGGTATTGGAGGCACATAGCAAGAGGGAGAGTGCCGTCTGAGACGGCAGGTCTGTGTGGGCATTGATGTGAGGGGCAGAGATATATAGAATAAGTACACGGTGAACACGACATGGAGTGAGGACCTGTCACAGCCTGCAGCAGGCTCAAGCATCCGTGGGACCGACCTCCCTTGATGGTGAAGAAGCTCACCATAGGCTCAAGGCCAGGTGGGAGCCTTTGCCAATATTCCTTATGTAATGTCATTCATGCCAACTCTGTTTCCACCCACTGACCATCAGGTTGTCACTCTTAGGGTCGGGGATCTGGGGCAGGGTTTAAGCAGTTTGTCAGAAGGAGATGGAGGGCATGGATTTGAACCCAGAGATTCTTTGCCTGTGGATCTGAGCCAGAAGAGTTCTAGAAGAATGGAAGCCAAGCTACTGTAACCACTAAGTGCCGGGGCCCACACACATGGCTTCTGCCCTCAGCCCACAGCTGTGCTGAGTTACAGCCATGCTCATTTATGGTGCGCACACCCTGCTGGATCCTTCATAACTCTTGCCTCTTAACTGGGCAGTGGGGAGATGAAGTCAAGGCTGGCAGATGGGTACCACAGTCCTGAGCAAGTTGCTGTTGCCGGGAGCAAAGCAGAGTATCTGAGGGCCACATAGTTCATAGCAGCACAGGCCACCTCGGTGGCTTTCTGAAGGTCACTAGAGGCATGCAGTGGAGGTAGAGAATAGAGAATGTAGCTGGGCTTTGTGCCTTTAATCCCAGCACTCGGGAGGCAGAGATCTCAGAATTTGAGCCCAGCCTGATCTACATAACAGGTTCCCGGCCAGCTTCCGTTCAACATCACAAAACATCGATTAAATGGGATCAGGATGGGGTCGGGGATGCAACAGGAGCATTCTCTGAACCTGAGGGAAACCTTGCTAGGTTGCTCAGGCTTCTTGACCAAATGCCCAAGCATCCAGCAGTTCCGCTCACCTCAGTGTCGGCTCCACTCGGCCACTGGCTGGAAGCTCTAGGACTAAACAGAACTCTGAGGGCTGCAACTGGAACTATACAGGAGCCATGAGCTTGGCAGTCAAGGAAGGCAAACCTGCAGCTATCCTGGGAGGAGTGGTCCCTAACAGGGAGCTGGGGTACACCACAGCCTCCCCTATCTGACCCTTTCTTGGGAGGAGGCTGGCAGGGCACAGGTTCTGGCTCAACACCTCATAGCTCTTAACCACATCTTGCAGGGTGCTAAGGAGGCCTTGGGCCCCCTTAGGGGACACTGGGTTGTGGAAGGCCCTAGAAACAGTAAGTAGCCCACTTGCTCCCTGGAAGGGTAGCCTGCTGCCTACACACACTAGGCCTACCACTAGCCATTTCACCCTCTCCTCCAG
Seq C2 exon
GTCGTTGTGTCTCTCAGGCCAGCAGCAGAAGAGCAGGAAGCCCTGACCTGCGGGAGTTATAAATCGGCCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAGTGGGCTCAGAGGCAGGGGGTGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGGAAGGGCCTCGCCTCTGCCTCCCCACAGCTATGGTAAGCTGGGCATTGGGGAGAATGACGGGACTGGTACATCTAGATGGAGGGGCACAGGTGGGAGCTGGGGTCTCACTCATTTACCTAGGAGAGATGCACCTTCATTTCTCCCCTGTGGTAAGCTTGGGGTGGTGGTAGTGGTGGTGGAGGAAGTGATATTGCAAGGGGATAATTTTTAAAGCCCCCCAGAGTGCAAAGAGGCCTCAGGGGAGTGAGGGAAAGACAGGGGGTTTAGGGGGCTGAGCTGGGGTTCAGCTGGCAGTTCTTGTGCCTTCCAGCCCACTTCTAGGACTGCTAGATCCTCTTGACCCCCTTCTTGCAGGAGCAACAGGAGAGGGAGTGAAGAATTGTAAAGAGACACCTAGGCCTTGTCCCTGACCCCTGGGCTGGAACGGGCATCAAATGCTTTGCTCTCTCTCTCAGGACTGACACGTGGCACATGCTGAGGGGCTCTCTCCAGAGCTGCGGAGAGTGTGGGTTTCACCATGTTGGCACCAGGCGGTGGCCCAGAGCAGAGGAGCAAGCTTGTCCTGCAATGGAGGCAGGTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055003:ENSMUST00000068351:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.130
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types