MmuINT0096264 @ mm9
Intron Retention
Gene
ENSMUSG00000025409 | Mbd6
Description
methyl-CpG binding domain protein 6 [Source:MGI Symbol;Acc:MGI:106378]
Coordinates
chr10:126720448-126720998:-
Coord C1 exon
chr10:126720582-126720998
Coord A exon
chr10:126720501-126720581
Coord C2 exon
chr10:126720448-126720500
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CACTATCCATCTTTCCTCAGGTG
3' ss Score
10.27
Exon sequences
Seq C1 exon
CAGATCCCTCCAGAGCAGCCAGACGCCCCCTGTCTGCCCCCCGAGAGCCCCGCCTCAGCCCTCGAACCGGAGCCTGCCCGGCCTCCCCTCAGTGCCTTAGCCCCACCCCATGCTTCTCCTGACCCCCCAGTCCCCGAGCTGCTCACTGGGAGGGGGTCAGGGAAACGGGGCCGGAGGGGAGGAGGGGGACTTAGGGGCATTAACGGTGAGACCAGGCCAGGCAGAGGCCGAAAGCCGGGCAGCCGCCGAGAGCCTGGCCGGCTAGCACTCAAGTGGGGGACACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCCAAGAAGGACTCACCATTGGCAGCATAATGGGGAGCTAGCGGAAGGGGGTGCTGAGCCCAAGGATCCACCCCTTCCTGGGACCCATTCTGAGGACCTTAAG
Seq A exon
GTAGGTGTCCTGATGTAAGGTTCAGGTACTGGGCTCGAGTGCGCGTCTCCCTTTCCACACACACTATCCATCTTTCCTCAG
Seq C2 exon
GTGCCCCCGGGGATAGTCAGAAAGTCTCGTCGTGGCCGGAGGAGAAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025409-Mbd6:NM_033072:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATGGAACGGTCCCCAAG
R:
GTATTTTCTCCTCCGGCCACG
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: