BtaINT0090384 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010616 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:HGNC:20445]
Coordinates
chr5:56277419-56277987:-
Coord C1 exon
chr5:56277574-56277987
Coord A exon
chr5:56277472-56277573
Coord C2 exon
chr5:56277419-56277471
Length
102 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CACAGTCCATCTTTTCTCAGGTA
3' ss Score
8.42
Exon sequences
Seq C1 exon
ATCCCTCCAGAGCAGCCAGAAGCCCCCTGTCTGCCCCCTGAGAGCCCCACCTCAACCCTTGAACCGGAGCCTGCCCGGCCTCCCCTCAGTGCCTTAGCCCCACCCCACAGTTCTCCCGATCCCCCAGTCCCTGAGCTGCTCACTGGGAGGGGGTCAGGGAAACGGGGCCGGAGGGGAGGAGGGGGACTTAGGGGCATTAATGGTGAGGCCAGGCCAGGCCGGGGACGAAAGCCTGGCAGCCGGCGGGAGCCTGGCCGACTGGCCCTCAAGTGGGGGGCACGTGGTGGCTTCAATGGACAAATGGAACGGTCCCCAAGAAGGACCCACCACTGGCAGCATAATGGGGAGCTGGCTGAAGGGGGTGCTGAGCCCAAGGATCCATCCCCTCCTGGGCCCCATTCTGAGGACCTTAAG
Seq A exon
GTGAGTGTGGGTGGGTTAAGTAATGGTTGTCTGGGCACAAAGGCCCTCAGGAAAGGTTGAGGCCAAGGTGCCTTTTCCCACACACAGTCCATCTTTTCTCAG
Seq C2 exon
GTATCCCCAGGGGTAGTCAGAAAGTCTCGTCGTGGCCGCAGGAGAAAATACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010616:ENSBTAT00000014034:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGCATTAATGGTGAGGCC
R:
AGACTTTCTGACTACCCCTGGG
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]