MmuINT0096777 @ mm9
Intron Retention
Gene
ENSMUSG00000039842 | Mcph1
Description
microcephaly, primary autosomal recessive 1 [Source:MGI Symbol;Acc:MGI:2443308]
Coordinates
chr8:18631516-18641665:+
Coord C1 exon
chr8:18631516-18632643
Coord A exon
chr8:18632644-18641564
Coord C2 exon
chr8:18641565-18641665
Length
8921 bp
Sequences
Splice sites
5' ss Seq
AAAGTATGT
5' ss Score
6.93
3' ss Seq
CCACTCTACTTGTTCTTTAGGTG
3' ss Score
9.39
Exon sequences
Seq C1 exon
ATGAATCCTTTGCCAGTGGCTCCCACTCATCTTTCGGTGATTCCTGTGGAGATCAAGAAAGGAAACTGGGAAGATCTGCTAATGAGATGACCACGGTGACATGCCCTTCCTCACCTGTGTTGAGGGCAAGCAGTTTTTATGGCTCAGCATCACCCAACCATCTCAGGCAGCCACGTCCTCAGAAAGCTCCAGACAGTCCTTCAAAGGAGAGCATCAACTGTCAGAAGGATGCTACAGGTGCGGTAGCTGATTCCGAGAGAAAGCAAGCTGCAGGTGTATCTCAGGGGGTGCCTGATGAGAAGCTCTGTCTGTCTCCTACGATGTCCATCATAGAAGAACACCAAGTACGGTTGGGACCCAAGAATTCTTCTGCAAAGAGAAAAAGGGCAGCGGACTTGGGTTCATCTCCAAAAGGAAAACTGAAGAAGAGGTACAAGAGAAAGTCTGCTCTGGCAATACAGTTATTCAAGTCCGACCAGAGCCCGCCGTCCACAATCAGACTCATTCCGGGAACTCCTGACGTTGAGGCTTCTTCCTATGAGGACTATTTTTCCCCTGATAATCTCAAGGAGAGGAATTCGGAGAGACTTCCTCCTGAGGCTCAGCAACTAGCAAGCCCTTCTCTGTTCCACTGCAGAGGTCTCTCAAAGTGGGAGCGAAGAAACATGCTGGAAATGTGTGATTTTACCTGCATTGGTGAAAAGCACAGATCCATCAGCAGCATTAGTGACTTAATTTCAAAAAGTGCCTCTAGTCTTGAGAAACCTGTCAAGGAGGAAGTGAATACAGCTTCTACCTGCTTGCTTTTGGTGGAGACCTCTGCTAACGACAGCCCAGGGCTTTGCAGTCAGCCTGGCCCTCAGCTGAGGGATGACACAGGCCCAGAGGGAAGCAGCCACCCTGACACCCTGTCTAGTTCTGCCCACCACATCACACCCTTGAAAGGAAATAGTACAGAAACCAGAGACCCAGGTGATGGAAAAGGCTCCCCCAAAGAAGGTAGCACGCCTCCTGCATCAGCCTCTCCTGAAGATGAAGTACACATCTGTAATCTCAGTTTGGGAGAGGATTGTAATGTAGAAAAGTCTGTAGAAGAAAAGGAGAACATAGCCACAGGATATAGTGAAA
Seq A exon
GTATGTGAGCCTCATTTCCCAAGTATTGTTTGTTCTGCCAGTGTGTAATACTGTGCTCGTATTTTAAATCTGTCCTTAATCTTTATAATTTAAGTCCTTCCCCCTCTCCTTTTATTTTAAGGAATTGATATTTCCAATGATGCTCTTGAGGGATAGGTGGGAGGCCCTGACCTGAACTTTGTAGTCAAATGTGTCACCATGAAAATACCTCCCCAGGCTTTGTCCTAGTGGATTAAAAGAAACAGTAGTGCTTACTTTAAACTGTTGACCTGTATACCTTTCCTATATGCCTCTCTCACTCAGCATGACTGCACCAGAGACATAACTGATAGAGGAATTTCTTTTCTTTTTATTTTTAATTTGAGTTTATTTAGTAAGGGTTTTAATGTGAGGAATGCAGTAAAGAAACCGCCAAAAGACCGCTCCATAACTAGGAAGGTTTTTCTTATGAATAAGAAAGTATCCAGAAGCATCTGGAATAGTCCAACACAGAGAGAAAGAGAACCAGACTGGCTGTGGCCATGGCGATCTGCCAGAGAAGAGAGATGAGCAAGAGGTGAAGAGTGCAATTCAAGAGTGGTGGGGAGCAAGGGAGCAAGAGATGCAGGGGGTGGGGGAGGAAGGGAGGGAGGGAGAGAACAAGAGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGCTGAGGCTAGCAGGAGTACCCAGGGCTGAGGGCTCTGAAGAGAGCTGGGATCTGAGGTTCAAAGGTTGCAGGTTGGAGGCTAGGGTGGAGGCTTGTATACTAAATGCTATCAATGAGGGAGCCTGGCGGCAGCATGGGCTTTGATACAGCCACAGATACATGTTAGTGTAGCCATATGTCCTTTCTGCTGCACATAAGAAAAGTGACTCCTTTTGGCTTGGGAACTATTTTCACAAGTTCCTGAGGAAGGCTGGCTTTTATCTATCCAGATTGAGTTGGGCGTAGACTCAATTTTGGGCCAAGTCAGAAGGCTTGCCCTGGTTGACGTAGGGAATGGGGTTGCCCGTTTGACCTGGCATGCTTCTACTGTAGAACTCTAGAGAGCATCAGCCATGATTTTGCTAACAGAAACTATGAAAAAGTTTTGAAATTTGTCATCACTGTTTACTTTGGGCACTGAAACTTTGGGCAATGTTAAATAAGAGCAAACATTAATTAAGACATTTTGCTCAATTAAAAATTTAGTTTTGGATCTCTCTCCAGCCCCCAAGTAACTCTGGTGTGGCTTTGATTTCTGCTTATTTTGTATCAAGACTACCATTCAAATAGGTTTGTTTATTCCAATCTGTAACTTAATTATAATTACTAAAGTGATTTATTTGTTGATCAACAAATAATAAGCTATATGATTATAGGGATTTAGGCAAAGATGGCAAAAATATCAACAGATTTTTGCAAAGTTGAACTCAGCCTTTGACCATTATTTAAGTTTGGCTAATATTAAATATGATCCAACTGACTCTTGATCAGTTCTACACTTGAGGTGGTTTCACCCACTGTGGCTAGGGCAGCTGTGTTGGGCTGAAATAATCACAGTTCTAGCTCTTTGAGAATAAACTCACCTAAATTGGCTCAGTACATCAATTAAATGATTTTTGGATTTTAAGCTGGTAAATAGCTTGGGTTTTGAATAATTTATATTATATTCATAATAGTATTGTTACATCTAGATTATTATGTGTTTTCAAAAATGTATAAAATTACATAGACTATAGTAAATATGAAAAAGTATAATGTTTTGACAGTTCAGAATATCCTGTCTTGTGTTTTGAGTTTTTATCTTTTTTACAAAGCACTTGAATATTATATGATATGTAAATATAATTTAAGTGGGGCAAACAGCCCGGCACACCCTAAACCCTAGCACTGCAGGTGTGCAGTCATTAGAAGAATGTGTGTTTCTTCATCCAGGGCTCAACCTTCCTGTCTTCAGTCCAGACCATTAGGCTTCAGAAACTGCATGAAGGGCATGGGCATTGGGTGGCACTCCAGTACTCAGAGGACACTGGGAAATGTGCTGATTGTGAAGTGGGCCGGCTTGCTGGGACACAGGCAGGGGTGGGTGTGACTAAGTTTGACTCTGATGGAAATATTCTGTAAATTATCACGTCACTACCACAAGACAACATGGGCTCCTAAGACATGAAAACCCCTCTCTAGCCTAAATCTAAGCACTTTTTTATACTTAGTAACATTAAGAAGACTCACGAATATTTTATATTGTCCACTATCAGCCCAATCTGGATTTGGGACAATCAACTCTTTGGAGATCCATCCTAGATACAACCATAAATCCTTGGGCTGAAACGGAAATTCCATACTTGCCCCAAATAGAGCCAGGAAGGCTGCTCTGAGCATCAGCTACACAGACCCTCTATCCTTCTTGTTGACATGAAGGGCTATTCAGTGCCATTCCACCCCACTTAAGCTTGCTGACTCTAAGATAGTGTGCAATGAGGCTTCTAAAGAAAGCAACCAAGAAGTCAGTGGCTGATCTTGAAACAGTGGGGTATAATCATTAACTCTTCACATTTTTATTCAATACTTTTATGAACAATTTAACAAGAAGTTTCCTTTGTTAGAAAGAATAAACCTTTCCACCTCAATTTCTCACTTTCTGCCTGTGTTAATTCTCGAATTCCTATTAAAGGATAGTGGTAGACATGCTGCGCCTCACATCTGTTTCTACTTCGTAAAAAGAGAGCTGAAGGAATCAGTATGCACCCCTGCCCCCAACAGGTTCTGAGGTCCTTGAAGAAGCCAGATGATAAAGGCAGATAGAACACGGCGTCAACTGGTGGGTGTATTTCAGGGAGCACAGGCGTGAGAGAGAACAGCCAGAGCTGGGGAAGAAGGAGAGTAGAAGTGAGAGATAATAGAATGAGAGACTAGGAAGAGAGTGTAAAAAGAGTCAGAGAGAGTAGTGAGACTAGCTGAGAAGGAGGAGTAAAACTCGGTTATAAAGAGGACCGATGTTATCTGGAAAAAGTGAAGCCCAGGGAAGGGTGAAGGTCTGTGGTGCTAGTGTGGACTTCAGAATGTCTAACTGGTGGCACTGAGGGAGCCTGGTGCCAGCACGGGCTTTTATGCAGCTGCAGGTACATGTCAGTGGAGCCATGTGTCCCTTCTGCCAGACAGAAGGGAAAAGATTCCTTTTGGCAGGTGAAACCAGTGTCAGAAGTTCCTGAGGAATTCCGGCTTTTATCCAACCCTCAGAAATCCTCTTGTAGTTCAGGCAGTGCTCATTTCTGACTAGATAGACTACCTTTTGGAGTTTGAGGAGTTGAAGCGTCCTTTGGTAAACAGTGATGCTGGAGAGTATAGGTGGCTCCACCAGGTACCCAGAAGGCTCCTCTGAGGAGGTTTTATGGACCTTAGGCCAGGTGAGAGGGTGTGCTTGTGTCTACTGGAGGTAAGTACAAATGGCCGAACATCCTGCAGGAAGGAGGAAGCCAGTGCAGCATCAAGCCATTGAGCCTGCGAGGTGAGGACAGTGACCACAGTGTGGCAGCAATCTGATCCTTGAGACCTTCCCTCCCCATCGAGACAGGGTGTTCCAGTTTGTTTTATAGTGTGATGAGAAGTTGCTGGGGATTCTGAGCTGGAGCAACGAAATCTGATTTGTTTTCACTGTAACCCTGGATACTCTGAAGAACAAACTGTGGCTTAGTGTGTTTGCTAGAAGCAATTACTGTCAACAACAGCCCTTCCAGATAACTATGGTGCATATAAACATGCAAATGAAATATATTTAAAGGGATTCTCTCATATGCATAGAACTGTATTATCCTGTTGCTTTAAATGGGTCTTTTAAAAACTCATAACAATATGTCAGATGCCCTGTTCATAGAAGATACTTGTTTCTTTTAGTATAATCTGTGTTGAAGATCAGTGGTATTTTCTGTAGTGGGTCAAAAGGATACAAATAGAGAGAAATATAGATAATTATAAAATACAGATAATTAGAGAAAAGACATTCTTGCAAAACTTTGATTGATAAAACACAAAATTGAGTATAGTCTTGGAATGCATGTCTGCTCTTGAGCAGATTTCTTGGGTGGGGAGAGAATGAGTGACCCTGTAATTTAACTGGAACTCCGACAGGTGAGTTCCCATCACCTAACCTGATTGCAAATAATTCTTTAAGGTTATTGTGGAAGGTGTTATGCATCTCACGCTTGAGGGCGCCTTTTCACAAACACTGGTCTTGTCCAAGTCTGATGCCAAGGGAATGATTTTCAGACTTATTGGGTCTTAAAGGTGGCATTTATGTAATTATAGGTTCCCTTGCCACAAGCATCTTCCAGCAGGTCCTGATCTTCTGCATGCATGACTTGGTGGTGAGAAGATAGGTGGGAGCTCTTGGATCATGCAGGGAAAGAGATCTTGCAGTTAGGCTATAGGTTTATTCTTTTATTAGGTCTGGGAAATGTTGTAGGAACTGTATGAAGTCTGAATTCAAAAAGAAATGTCTGCACCCAAGTTACGTGGAGATGGGTGGAGGTCTTGCTTTCTGTTTTAACGTATTTATTTTGGAAGCAAGATCTTACTGTGTAGCACACTTGGCCTCTACGCCGCTGTGACTGTGGGTATGTGGCAATACACCACGCTTCATTTATCTTTCGACGGTGCAAGGCAGGAGGTATGAGAAGCAGCTTGGTGAACATTGAGATGACACTCTTCCGCCTCTGCTCCTAACATGCAGTCCAGCTGAACCGCCCAGTAGATAAAGTTTGCCAGCCGTCCCGAGCACCGTGGTGTCTGATGCAGCTCCTACTGCCTGTCACTAGTGATGGTAACGCAGGAGCTCCGTATGTCTCATCTGAATACCAGCAGAGTTAGTACTTTCCGTGCTATACCCCACATCTGGCCAGATCAGATTCAATGCAGATCTGATCCTGTGCAGCGAGTGGTGGAATTTCACGTCAGCATTTTATACATGTGTGTTCAGTTACCTGCACATTTTGGCCACGTCCACTATTGGGTTCTTTTACAGTTACCAGCTGTTAGGAGTTGAATGATGGACCACTGTCCTTCCAGCAGATCTGGCTACCAGATCTTACAAAAGACAAATTGCAGATGCATACACATTTGTTGTTGAGCAAAATGGAGAAAGCCTTCCAAGTAGACAGATCTGCTGAAGACCTAGCCTGTGTCCCTTAACTTAGTTTCCTGTTTGGGGCAAGCCTCTATAAAAGTTAATGTGTGCCTCAGACTACCTAATATGTCTGTCTTTCATCATAGGTCATTTAGGATTCAAGATCTGGGCATCGTCCGCAGGGATACAAGCTTCAACTAATACCAGATGTTCATGCCCTGCTCTTGCATGGTTGTGGAGTGTTTTGTAATAATATTCCTGCCAACCCATTCTTGACTTCAAGAAGTTATCCAATGGGAAGCTTTCTGACAGCTTGAGGATATCAGTCACAGCTCATTTGCTTCATGCATCCTGGCTGGCAGTTAACAAGGCATTTCAAAACGGGCTTGTGCACTCACCTCCCAGGTGTAGCAGCTGGTAGCATAGGAGTGGATGACACCTGTGTTTTGATGGGGCCAAACATGTACCTTCTATGAGTCTATACTGAAGTATTCTAACAAAGAAACCGTCATTTCTGCCAAGTGTTTAATCCTAGTGTGTTAGTCTGATGGCAGTGACTGGAACTAGCTGGGCTGATCTTGGGAGGCTGGAGGGGTCACTGCCTGTAGCAGCTCTGGGCTTATCAGTACAATGAGGCTGTGACAGACAGGCCTTTCACGGGACCAGGGGCTCCTGTGATACAGGGAGTTAGTTACTGAGCCAGTAGGATATGCTGATAATGGTTGTATGGGAAGATCACAAGCTCAGGATCTTGTGGAATGTCTGTCTGTCTCTGCTCACACTTGTAACTTTTTGAGTTTTCTATCACTGTAAAAATGTTGGAGCTGGGGTTCTCACCTATGTGTTTTTGTTGAGACATCGTCTTGCTCTGCATCCTACCCTGACCTTGGAGCAGCTTTCCTACCTCAGCCTCTAAGGTGATGGAATTCTACTCCTGTCCCACAGTACCCTTCTGCTTGATCCTTTTTCTTTTTCTCTTTCTTCAGTTGCATTTGATTATTTTGTGGAAAGTAGGGCAACACAGCATGTATGCAGTGAGGCTAGCGAAAATGAGAGGCATCTAGGATTTACAGTGTGGATAGAACACTGTCTACCCCAACCAACCCCAACCCCAGGCCCCAACCCAGACCCTAGATGAGAGTGTTTGGAAATTGGGCCTTCGGAAGGAGGTTACATTCAGCTGAGATCTCAAGGCTGGGGACCTTATGATGTAACTGGTGTTTCATAAAGAGGGTAAGAAACACCAGGAATTCTAGTCTCCTTGCCTGTGTGAACAGGCCGGGGGTTGGGGAGAAGGCTCACCAGAAGCCAATTATCAGTGTCCAGTTAGGATCAACATCTTCGAAGTCTCTGGAACAAGAGATAAATCCTCCTTATCAAGAGACCCAGTTAAGTGTTTTAAGACATTCATCAGACTGTCGTATGGAGGAACAGCAGTTCACTGGAGCCCAACTGTGGGCAGGTGGCCAGGCTTCACCTAAGACACTCCAAATAGATACCTGTTAGTTGGTTGCATCTATCCATCCATAGACAGGGAAGGTACTTAGCAATGTAGGGATAGATGGTGTTATGGGACCTCATGGTGTCCGGGGTGGTGGGGCTGTTTGCACACTTGCAGCACAGATGTGACACTTGTGAAAGACAGGAGAGCCAGGGGAGGGTGCTGGGAGATGGGACCTGACTGGCCTTAGAGCAGCCTTGCATGGTAGAGCATGCGAGATGTGTTGAGAGCTATGTGCTTGCTTTATTCTGTGACTCGGGGGTCTTATGTCCCCTTATGAATATTCTATCCCTAAATCACTTCTAACCTCAGATCTGAAAGATGATTTAAAATGAGGCCTGTTAGAAGCAGAGAAGTTCTGTTTGTTTGTTTGTTTGTTTGTTTTTAAGATTGTTAAAAGCATTAGGAAGTAATTTAGAAAGTTGGTGTCACTTGCCAGGTGACAAAAACGTTTGCTACCTCTTAGAGTAGACTCTCACTAACCCTCTACCTGCTTGCTCCAGTCCATCATCCTCTTAAAGCCAACTGAGGGCTTCAGTGGGTGGGCAGTTATCTGAGATTGAGAGGGACATGACATTTAAAAGATGCCTGAAGAGGAAGGGGATTAATGTGTGGTTGGTTTGTCTCCAAAGGGATCCAGTTTAGACTTTTATAGGCAAAGAATGTTGACCTTAAAATGTTTATAGGGCCGAGGGTACAAATAACAGCTAGTTTGAATTCTGGAAAACACTTAACTATTATTCTGTGTTTTTTGAGTTCATGATTCATTTTTACACTTATTTATTGTGTACTGTGTGTATGCAAGGGTGTGTTGGGGGGGGGAGGCTGTGTCAGGACAAATCTTAGCAGTTCTCCCTGTACACCATGTACGGTTTGGGGGTAAGGCGCAGGATCCTCCACTCACTGAGCCATCTTGCTGACCCTGCTTTTATTTAGATACAATTCCGTTTTGAAGAAGTGTGACTCCTCAAACTTGGATCATTCTCAGCTTTATCACACTGCCCCACCATTTGCAAAGTAGACTTTCTCATGGTGTACACACTTTAGTTTCTGTAGGTGTTTTTATGATTTTGCCTTGGAGCATATTTATTTGCATGTCTAGCCACATACATTGAACCATCTGCAGCGGCACCCTCATGTCGTCCTCGCCAATATGTGAACCAGCATATAGGTGGGATATGCAGTTTAGTTGATGTAACCTTCCTCGGCTGTTGCCCTCCAACATCACAAATGTGGTCGTATATGTCTTGTGGTATTTTCTCCTTTAAAAGTCCAAGAAATCTTTAAAATAAGCAGTCACCTGGAGAATAACAGCAATTATGCAAGGCTACAGTGATAAAGGACAACTCACATACATACACACGCACACGCACAAACGCATCGTTCTATGCACCTGGAATATCTCGGAGCCACGTGGGATGCAGTGGAATCTCTTTACTTGTGTATCTATGGCAAGAAGTTGGTTTAATGTAAAGGTCTGGCAGAGAGCAATATCAAGTATGTGCAGATTAATACCTAAGCTTTGTACGGATGACCACTCACTCTACAGGATCTAAGCATAAAGCTGACATAATTGATTGCATCTAAGAAGTATCTTCTCCGACAGGCTGGCTTTTATTATTATTTCATAATTAAGAGTTGTTTTGAATGGTGCAAACATGCAGATGTGGTGAAGTGCTTTGGGCAATCATGAATATTTTCTTGGACAATTGAGGGAATTGCAGGGAGTTGCCTACTAGCTCGAACTACAGGTTTGGGGTTTTTTTTGGTTTGTTTTGTTTTTTGGGTTTTTTGTTTGTTTGTTTTTTTGAGATCATATATGTGTATGGTATCTATATATAGTCAATTGTGTTTATAGCACATACACGTGTCTGGTCCAAGGGTATGGCATTGCTCTCCATCTTCCTCTTTGAAGCATTGTCTCACCTAGGGGTGGTCAATAAGTTTGGGTCTGGTTAATGCCATGGTATGTGACGTTTTTATTTATTTGCAAGTCTTAACATTTAGTTTAAAAATAAAGAACACCACCACTGCAGTATGTCTGGCCTGGCTAGTCTAGCACTCAGACTTGTGCTGCAGTGCCTCATCTAACCAGTTCTCTCTCTCCAGTTCTTAAAAGGTCTCGGCAGGTTATGGTGGTGATTGACAGAGCCTGTGGTATTCTGTTCCTGCTAAGCAGAAACAGAATGCTTGGTTTTTGTTTAGCTTAGCCTACATTTGTGTTTGATCCACGTTGTTTCTAGCTAACGTCCACTCTACTTGTTCTTTAG
Seq C2 exon
GTGTTAAAAATGGACCAGGGCGGCCAGATCCTTCAGACAGCTCTTGCACAGGCCTTGTCAGACCTCAGCAGAAACCAAAGAAAAGTGAGAAAGAAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039842-Mcph1:NM_173189:8
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.737 A=NA C2=0.931
Domain overlap (PFAM):
C1:
PF122583=Microcephalin=WD(100=99.5)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: