MmuINT0101416 @ mm10
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113130885-113131467:+
Coord C1 exon
chr12:113130885-113131000
Coord A exon
chr12:113131001-113131315
Coord C2 exon
chr12:113131316-113131467
Length
315 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TCCAACTTTGTTGTCCGTAGCCA
3' ss Score
8.64
Exon sequences
Seq C1 exon
TAACAAGCCCAACCCAAACCAGATCAGCGCCAGCAGTGTCAAGGCCACTGTAGTGAATGGCACAGGGACACCAGGCCAGAGCCCCGGGGCCGGTCGGGCCTGCGAGAGCTGTTACA
Seq A exon
GTAAGTGCTGTCCCGGCTGGCACCCACCCTGGGCAGCAGGGGCCACGGGAATGGATGCTACTGTGTGGCCCCTGAAGGCTCCTGCGCCCAAACCTGGAATGACTCACCATAGTGGGGCTGCAGTGGTGGTGGTGGTGGCGGCGGGGGGTGGGATGGGGTAGTTTGGAAGAGTTCCTCAGGAGTATGAGGTTGGCCTCCTTTGGTCCTGAGCCAGGAGTTGGGGTGGCTGTGGTGGCGGTGGGGACACTGTGGGATGCTCTCTGCACCGTTGGTCCTGCTTAAGAATCCGTCTATTTCCAACTTTGTTGTCCGTAG
Seq C2 exon
CCACACAGTCTTACCAGTGGTATTCTTGGGGTCCCCCTAACATGCAGTGTCGCCTCTGCGCATCTTGTTGGACATATTGGAAGAAATATGGTGGCTTGAAAATGCCAACCCGGTTAGATGGAGAGAGGCCGGGACCAAACCGCAATAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144:ENSMUST00000009099:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.875 A=NA C2=0.261
Domain overlap (PFAM):
C1:
PF0032022=GATA=PU(13.2=12.5)
A:
NA
C2:
PF0032022=GATA=PD(84.2=62.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCCAACCCAAACCAGAT
R:
GTTATTGCGGTTTGGTCCCGG
Band lengths:
262-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types