MmuINT0102304 @ mm9
Intron Retention
Gene
ENSMUSG00000075464 | Muc19
Description
mucin 19 [Source:MGI Symbol;Acc:MGI:2676278]
Coordinates
chr15:91728465-91729903:+
Coord C1 exon
chr15:91728465-91728621
Coord A exon
chr15:91728622-91729777
Coord C2 exon
chr15:91729778-91729903
Length
1156 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTGCTGCCATTCCTTCACAGCTG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTGGACCCCACGACCTACTACGATGCATGTATTGAAGAAGCCTGTTCATGTGACATGGAGGGGAAGTACCTTGGGTTCTGTACTGCTGTGGCAATGTATGCAGAGGCATGCAATGCAGCCGGAGTCTGTGTCTCATGGAGAAAGCCAAACCTCTGCC
Seq A exon
GTAAGTGAACTTTGGTTTTCTGAAAGTTGTAAGTAGACATGTTTGTTTTCGTAAATGACCGCTCTTCCTCTCAGATGTCCTATTAGGCACATATTCTCAGATCTAGAGGGGGCTGAAGATACCCTCACATGTGTGTTCATGATGGTGAAAATACCCAACAGAAATAACACAAGGTATAACGTTTTGTGTTCAACCTTAGTTAGAAACAGCCCTTTTGTTCATAGAAGAAATATATGGAATACTGATGGAAAATGCATCCCTACCCTTGATGAATTTGAGTTTTCATGTGTCCTAGGCATGAGCTTCCAATACTGCTCTTGGTTGAAATCCCCACATATATTTCCTTGACACACCACCTAATTGAAAATGATTTTGAATATGAAACGGATCTCTATACAAAGAACCGCATAACCATAATAGAAATCAATCAGACCTTTCCCCTGTAAGCAAAGCATGATGGGAGATGTTTTAAATGAATTTGAAACATTGACAGGATAAACATTGCATTTCGCCTACAAAGCTTAGTGATAGATCAACCTTATTTGACGAATACTACATCTCAAAAGAGCTTAATTTCCTCAGAATCTTAGTGAAACACTGTAGACCAGGTTCTTGCAGAACTCCTTATATAGCCCTGGCTAGCCTTGGTCTTGTGGCAATTCTCCTCAGGAAGCTTCTTCAGTGATTAGATTATAGGAGTGAGCCACCTGCATGCCTGTCAGTCCCCCCCCCACCCTCCCCCCCCGGCCCCACAAAGGGATTGCCTAAGACCATCAGAAAACACAGATATTTACAACCACCGATCCACATGATGGCTTAAAATATCTCCAAATGAGCCGTAAAAGGAAAAGAGGTGACTAAGTCTTTGGATAAATCCAAAGACACTTGGTGAGGTGAATGATACATATTTAGTCTATCACTGGTGCCATCTAGGATACTTGAGGAAAAAGAAGAAGAAGAGAGAGAAAGGAGAGGGGAGAGGGATTGTGTGTGGAGGGAGGGGGTCGCTGGAAGAGGTGGGATAGCGATCAGGATGTAAAGTGAATAAGTAAATTTATGGACAAAAAGTAAACATGAGTCAAAACTATTTTTGGAACTCGAAAGGTGGGAACAGCCGTGCTAGGAATGGATGTAATTTGCTGCCATTCCTTCACAG
Seq C2 exon
CTGTGTACTGCGACTACTACAATGCCCCCGGGGAATGCAGCTGGCACTACGAACCCTGCGGTACAGTGACGGCCAAAACGTGCAAAGATCAGGTCATTGGCCAGAAGTTTTCCTCACTTTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075464-Muc19:NM_207243:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCCACGACCTACTAC
R:
AAAAGTGAGGAAAACTTCTGGCCA
Band lengths:
278-1434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: