MmuINT0102399 @ mm9
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148979501-148979944:+
Coord C1 exon
chr7:148979501-148979615
Coord A exon
chr7:148979616-148979805
Coord C2 exon
chr7:148979806-148979944
Length
190 bp
Sequences
Splice sites
5' ss Seq
CAAGTGGTA
5' ss Score
-9.65
3' ss Seq
CTTCTTCTTCCTACCTGTAGCAC
3' ss Score
9.76
Exon sequences
Seq C1 exon
GTATGGTGCTTGATGACATTAATCAGATGGGCTGTGTTCCTGTGTCCCAGTGTGCCTGCCTGTACAATGGGACACTTTATGCACCGGGTACCAATTACTCTACTGACTGCACCAA
Seq A exon
GTGGTACGTTTTGGGTTCCCATCGAAGACTTTGACAGATACTGTCTTCCACAGGATTTGTAGACTTGTTAGGTCCCAGGCTGCTGTGGCCAGTGCCCTATGGGCAAGAGCTTTCAGTTTGGTGGCAAAAATGGCAGGAGTGTTGTCCCTGGGACTAGTATACAATATGTCCTTCTTCTTCCTACCTGTAG
Seq C2 exon
CACATGTTCTGGAGGGCAGTGGAGCTGCCAGGACATCCCCTGCGCTGGCACCTGCTCAGTAATGGGAGGCTCCCACATGTCCACATTTGATGGAAGGCAGTACACAGTACATGGGGACTGCACCTATGTGCTGAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-Muc5ac:NM_010844:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(31.7=50.0)
A:
NA
C2:
PF0009313=VWC=PD(66.7=89.4),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTTGATGACATTAATCAGA
R:
CACATAGGTGCAGTCCCCATG
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: