MmuINT0102412 @ mm10
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:141800944-141801288:+
Coord C1 exon
chr7:141800944-141801082
Coord A exon
chr7:141801083-141801174
Coord C2 exon
chr7:141801175-141801288
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
ATGGTATTCTGCTCCTCCAGGAC
3' ss Score
8.15
Exon sequences
Seq C1 exon
CACCTGTGAGAACAGGATGTGGCAATGCACAGACAAGCCTTGCCTGGCCACCTGTGCTGTGTATGGAGATGGCCACTACATCACTTTTGATGGGCAGCGCTACAGTTTCAATGGGGACTGCGAGTACACACTGCTACAG
Seq A exon
GTATGATTGTCTGGCACCCTCACCCGTGGCCACACACAGCCCTAGGAACTCACCACCCTTTCATGTCATGTAATGGTATTCTGCTCCTCCAG
Seq C2 exon
GACAACTGTGGTGGGAATGGCAGCTCCCAGGATGCCTTTCGTGTTATCACTGAGAACATCCCCTGTGGTACTACAGGAACCACCTGCTCCAAGAGCATCAAGATCTTCCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974:ENSMUST00000155534:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.5=59.6)
A:
NA
C2:
PF0009420=VWD=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGGATGTGGCAATGCACA
R:
TAACACGAAAGGCATCCTGGG
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types