MmuINT0102425 @ mm9
Intron Retention
Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148997588-148998379:+
Coord C1 exon
chr7:148997588-148997762
Coord A exon
chr7:148997763-148998128
Coord C2 exon
chr7:148998129-148998379
Length
366 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
AAGCTACCTGGCGCCCACAGGTG
3' ss Score
6.26
Exon sequences
Seq C1 exon
AGAGGAGAGACCTGGCCAATGCCGAATTGTTCCCAAGCCACCTGTGAGGGCAACAATGTCATCTCCTTGAGCCCACGCCAGTGCCCAGAGCTGAATGAACCATCTTGTGCCAATGGTTACCCACCTCTGAAGGTGGATGACCAGGATGGTTGCTGCCAGCACTACCAGTGCCAAT
Seq A exon
GTGAGTGGAATTAAGGTTCAACAGGGGGGGGGGGCAGCATGACAGAGGAGGAGAGAATGTAGTGGACATTAGGAAAGACTTTCCATTGTGAAGGCAAGGATAGGGATGCCAAGTAGAGAGGATGGAGCCCCAGAGCCATGGAGCCCAGTGGGAGGAGAGAAGGGTCCTCTGGGTCTTAGAATCTCAGTGGCTTATGAAGGACCTGCCAGGCCAGAGTCTGAAGGGACCAACTATGTGTGTCAGAAGGGTACAATAGTTTCAGAAGATTCTGATTTGGAGGCAACAGGGGAGGGGTTGGGCCAGCTGGATGAAAGCCACTCCATAGGTGGTATGGAGGACCTGCTAAAAGCTACCTGGCGCCCACAG
Seq C2 exon
GTGTTTGCAGCGGGTGGGGTGATCCCCACTACATCACATTTGATGGCACCTACTACACTTTCCTGGATAACTGCACATACGTGCTGGTGCAGCAGATCGTGCCCGTGTTTGGATACTTCCGTGTGCTCATTGACAACTACTACTGTGACGTGGGAGACAGCGTCTCCTGCCCACAGTCCATCATTGTGGAGTACCACCAGGACCGTGTGGTGCTGACCCGCAGGCCAGTTAGCGGGGTCATGACCAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-Muc5ac:NM_010844:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAATTGTTCCCAAGCCACCT
R:
CCACAATGATGGACTGTGGGC
Band lengths:
342-708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: