HsaINT1023959 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1193485-1194360:+
Coord C1 exon
chr11:1193485-1193659
Coord A exon
chr11:1193660-1194109
Coord C2 exon
chr11:1194110-1194360
Length
450 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
CTGCCCCTGGGGCCTGGCAGGTG
3' ss Score
7.34
Exon sequences
Seq C1 exon
AAAGGTGAGACCTGGGCCACACCCAACTGCTCCGAGGCCACCTGTGAGGGCAACAACGTCATCTCCCTGCGCCCGCGCACGTGCCCGAGGGTGGAGAAGCCCACTTGTGCCAACGGCTACCCGGCTGTGAAGGTGGCTGACCAAGATGGCTGCTGCCATCACTACCAGTGCCAGT
Seq A exon
GTGAGTGGAGCGCCGAGCGGGACCCAGGGCAGCCGGGGCAGCCACTCCCCACCCAGGTGGAAATGGGCGGGGCAGAGGAGGGGGCTTGGCTGAAGCAGAAAAGAATTGGGTGGGACAGCAGGAAGGACTTCCCAGCATCAAGGCGGGGCCGCATGGGGCCGAGCCTCCCCGCTTAGGGGTGCTGAGTGAATCCCTGTGAGCCTCGGAGCAGCCTGGCTGGAGAAGGTGGAGGAGTCTGTCCCTGCCTCGCTCCAGCCTTGTCAAGCGCCCGCTGGATGGAGCTCTGTGCGGACGCTGGCCACGTGTGTTCTGATGACGTGAGGGTCTTGTGCGCCCTGTGAGATGAGACGGTGGGGGGTCAGGGACAGATGTGACCTGTTGGGAGGAAAGCCCCAGGGCCATGGTGCCACCACCCGAGCCACCCGTAAGGCTGCCCCTGGGGCCTGGCAG
Seq C2 exon
GTGTGTGCAGCGGCTGGGGTGACCCCCACTACATCACCTTCGACGGCACCTACTACACCTTCCTGGACAACTGCACGTACGTGCTGGTGCAGCAGATTGTGCCCGTGTATGGCCACTTCCGCGTGCTCGTCGACAACTACTTCTGCGGTGCGGAGGACGGGCTCTCCTGCCCGAGGTCCATCATCCTGGAGTACCACCAGGACCGCGTGGTGCTGACCCGCAAGCCAGTCCACGGGGTGATGACAAACGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.6=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACCCAACTGCTCCGAG
R:
ACTCCAGGATGATGGACCTCG
Band lengths:
350-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains