DreINT0099003 @ danRer10
Intron Retention
Gene
ENSDARG00000078994 | muc2.2
Description
mucin 2.2, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120904-1]
Coordinates
chr25:8256983-8264749:+
Coord C1 exon
chr25:8256983-8263837
Coord A exon
chr25:8263838-8264501
Coord C2 exon
chr25:8264502-8264749
Length
664 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
ACACACTCTACTATTCATAGGCT
3' ss Score
4.67
Exon sequences
Seq C1 exon
GATGTTTTCTGACGTGTCCAGATGACAAACCATTTTATGATGATGAAAACCAAGTCTGTGTAAAGGACTGTTATATAAGTACAACTATTTCAACATTGACAACCACCTACACAAGTCCACTTCCTACATCTAGTCTTATGCCATCTACAACATCAGAAATACCATTTACAACTAGTATAACTCCTAGTACTAGATCCAATTCAACATTTTCCACCATATCAGTTACTACAACCCCCCAGAATCCATCTACAACATCAGAAACACTATCTAGAACTAGTACAACTCCTGGCACAACTACTTCCATATTTACAACCACTCATAGTACTACAACTCCTCTGACACCATCTACAACATCAGAAAAACTATCTACAACTAGTACAACTCCTGGCACAACTACTTCAACATTTACAACCACTTCTAGTACTACAACTATTGTGACACCATCTACAACATCAAACTTACTATCTACATCTAGTACAACTCCTGGCATAACACCTACTTCAACATATACAACCATTCATAATACCACAACTTATGTGACACCATCTACAACATCAGAAACACGATATACAACTAGTACAACTCCTGGTACAACTAGTTTAACATTTACAACCACCCCAACTTCTAAAACTCTTCTGACTCCATCTACAACAATAGAAATACCATCTACAATACACACAACTTCTGTTGTCAGACCTACTTTAACATTTACAACTACTTCAAGTACTACAAGTGCTCTGACATCATCTTCAACATCAGAAATACTATCTACAACCAGTACAACTCCTGGCACAAAACCTACTTCAACATTTACAACCCCTTCTAGTACTACACATCCACCTCCGCCTTATACAACATCAGAATTTCCATCTACAAGTAGTTCAACATTTATAACTACTTCTAGTACTACACCTACTCTGATGCCATTTACAACATCAGAAATACTATCGACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACAACTTATAGTACTACAACTCCTTTCACGCTATCTACAACTAGTACAACTACTGGCAAAACTAGTTCAACATATACAACCACTTCTAGTACTACAACTCCTCTGATGCCATCTACAACATCAGAAGTACCATCCACAACTAGTACAACTTCTGGTATAACACCTACTTCAACATATACAACCACTTCTAGTACTACAGCAACTCTGATGCCATCTACAACATCGGAAACACCGTCCACAGCTAGTAAAACTCCTGGCACAACTAGTTCATCAACATTTACTACCCCTTCTAAATCTACAACTCTTTTGATGTCATCTACAACATCAGGAATACCATCTACAACTAGTACAACTCCTGGCACAACTAGTTCCATACTTACAACAACTTATAGTACTAGAACTCCTTTGACGCTATCTACTGCAAGTTCAACTACTGGCAAAACTAGTTCCTTATTTACAACCACTCATAGTAATACAACTCCTTTGATACCATCTACAACATCAGAAATACCACCCACAACAAGTACAACTCCTGGCACAACTAGTTCCATATTTACAACTACTTATGGCACTATAACTCCTCTGACACCATCTACAACATCAGAAAAACCATCTACAACTAGTACAACTCCTGGCACAACTAGTTCATTAACATTTACAACCACTTCTACAACTACAACTCCTTTGATGTCATCATCAACATCAGAATTCCCATCTACAACTAGTACAACTCCTGGCACAACTAGTTCAACATATACAACCACTCATAGCACTACAACTCCTTTGACACCATCTACAACATCAGAAATACCATCTACAACTAGTACAACTCCTGGCACAACTAGTTCCATATTTACAACCACTCATAATACTACAACTCCTCTGACACCATCTACAACATCAGAAATACCATTTACAACTAGTACAACTACTGGCAAATCCAGTTCAACATATACAACCACTTTTAGTACTACAACTCCTCTGATGTCATCAACAAATTCAGAATTACCATCTACAACTAGTACAACATCTGGCACAACTAATTCCATATTTACAACAACTAATAGTACTACAACTCCTCTGATGCCATATACAACATCAGAAATACCATCCACATCTAGTACAACTTCTGGTATAACACCTTCTTCAATAAATACAACCACTTCTAGTACTACAACCACTCTGATGTCATCTACAACGTCAGAAACACCACCCACAACTAGTAAAACTCTTGCCACAACTAGTTCATCAACATTTACAACCCCTTCTACAACTACAACTCATTTGACACAATCTACAACATCAGAAATCCCATCTACAACTAGCTCAACTCCTGGCACAACTAGTTCCATACTTACAACAACTTATGGTACTACAACTCCTTTGACGCTATCTACAACTAGTACAATTACTGGCAAAACTAGTTCAACATATACAACCACTTCTAGTACTACAACTCATCTGATGCCATCTACATCAGAAATACCATCTACAACTAGTACAACTCCTAGCATGACTACTTTAACATTTACAACAACTTCTAGAACTACAACTGACCTGACACCATCAACAACATCTAAAATACCATCCACTACTAGTTCAACTCCTGGAACAGCAACTTCAACATTTACTACCACATCCATTACTGCTACTCCTCTGATGTCATCTACAACATCGGAAACACCAATCACAACTAGTAAAACTCCTGGCACAACTAGTCCATCAACATCCCCTTCTACAACTACAACTCCTGTGATGTCATCAACAACTGCAAAATTACTATCTACAACCAGTACAACTACTGGCACAGCTAGTTCCATATTTACAACCACGTCAAGTACAAAAACTCATCTGACACCATCTACAACATCAGAAATACAATCTACAACTAGTACGACTCCTGGTACAACTAGTTTAACATATACAACCACTTATAGCACTACAACTCCACTGACACCATCTACAACAAGTACAACTTCTGGCACAACTAGTTCCATATTTACAACCCCTTCTACAACTACAACTCCATTGACACTATCTACAACTAGTACAACTACTGGCAAAACTAGTTCCTTGTTTACAACCACTCGCAGTACTACAACTCCTCTGATGCCATCTACAACATCAAAAATCCTATCTACAACTAGTACAACTCCTGGAACAACTACTTCAACATTTACAACAACCTTTAGAACTACAACTCATCTGACACCATCAACAACATCTAAAATACCATCTAAAACTAGTACAACTCTTGGTACACCAACTTCAACATTTACTACCACATTTATTACTACTACTCCACTGATACCATCTACAACATCGGAAATGTCATCTACAACTTCTAGCCGTACAGCTACTTCCAAATCTACTCTAACTGTTGTTACTGGAAACACCAAATCTACCACTTATGCATCTGCAAAACCTCAAATTGACAATACCACAACCTCACTATTTACATCTACAACTTCACCTGTGTCTACAGAAATAACTTCTTCAAATAGTACAACTTCTGGCACAACACCTACTTCAACATTTACCCCCACCTCCACTTCTACTACTCCTATGACGCTATCTACAACATCAGAAATAGCATCTACAACTAGTACAATTCTTGGCACAACTAGTTCATCAACATTTACAGCCCCTTCTACAACTACAACTCCTTTGACATCTTCAACAACATCAGAAATCCCATCTACAACTAGTACAACTCCTGGCACAACTAGTCCATCAACAACTGCTTCTACAACTACAACTGCTTTGACATCATCTACAACATCAGAATACCCATCAACAACTAGTACAACTTCTGGCACAACTAGTTCAACATATTCAACCACTAATAGCACTACAACTCCTCTGACACTATCTACAACATCAGGAATACCATCTACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACAACTTATAGTACAAAAACTCATCTGACACCATCTACAACATCAGAAATACAATCTACAACTAGTACAACTCCTGGTACAACTAGTTCAACATACACAACCTCTTATAGCATTACAACTCCTCTGACACCATCTACAACATCAGAAATACCATCTACAACTAGTACAACTTCTGGCACAACTAGTACCATATTTACAACCACTCATAGCACTACAACTCCTCTGACACCATCTACAACATCAGAAATAGCATCCACAACTAGTAAAACTCCTGGCACAACTAGTTCATCAACATTTACAGCCCCTTCTACAACTACAACTCCTTTGACATCTTCAACAACATCAGAAATCCCATCTACAACTAGTACAACTCCTGGCACAACTAGTCCATCAACAACTGCTTCTACAACTACAACTGCTTTGACATCATCTACAACATCAGAATACCCATCAACAACTAGTACAACTTCTGGCACAACTAGTTCAACGAATTCAACCACTAATAGCACTACAACTCCTCTGACACTATCTACAACATCAGGAATACCATCTACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACAACTTATAGTACAAAAACTCATCTGACACCATCTACAACATCAGAAATACAATCTACAACTAGTACAACTCCTGGTACAACTAGTTCAACATACACAACCTCTTATAGCATTACAACTCCTCTGACACCATCTACAACATCAGAAATACCATCTACAACTAGTACAACTTCTGGCACAACTAGTACCATATTTACAACCACTCATAGCACTACAACTCCTCTGACACCATCTACAACATCAGAAATAGCATCCACAACTAGTAAAACTCCTGGCACAACTAGTTCATCAACATTTACAGCCCCTTCTACAACTACAACTCCTTTGACATCTTCAACAACATCAGAAATCCCATCTACAACTAGTACAACTCCTGGCACAACTAGTCCATCAACAACTGCTTCTACAACTACAACTGCTTTGACATCATCTACAACATCAGAATACCCATCAACAACTAGTACAACTTCTGGCACAACTAGTTCAACATATTCAACCACTAATAGCACTACAACTCCTCTGACACTATCTACAACATCAGGAATACCATCTACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACCACGTCAAGTACAAAAAGTCATCTGACACCATCTACAACCTCAGAAATACAATCTACAACTAGTACAACTCCTGGTACAACTAGTTCAACATATACAACCACTTATAGCACTACAACTCCTCTGACACCATCTACAACATCAGAAAAAACATCTACAACTAGTACAACTCCTGGCACAACTAGTTCAACATACACAACCTCTTATAGCATTACAACTCCTTTGACGCTATCTACAACTAGTACAACTACTGGTAAAACTAGTTCAACATATACAACCACTTCTATTACTACAACTCCTCTGATGCCATCTACAACATCAGAAAAACCATCTACAACTAGTACAACTCCTGGCACAACTAGTTCAACATACACAACCTCTTATAGCATTACAACTCCTCTGACACCATCTACAACATCAGAAATACCATCTACAACTAGTACAACTTCTGGCACAACTAGTACCATATTTACAACCACTCATAGCACTACAACTCCTCTGACACCATCTACAACATCAGAAATAGCATCCACAACTAGTAAAACTCCTGGCACAACTAGTTCATCAACATTTACAGCCCCTTCTACAACTACAACTCCTTTGACATCTTCAACAACATCAGAAATCCCATCTACAACTAGTACAACTCCTGGCACAACTAGTCCATCAACAACTGCTTCTACAACTACAACTGCTTTGACATCATCTACAACATCAGAATACCCATCAACAACTAGTACAACTTCTGGCACAACTAGTTCAACATATTCAACCACTAATAGCACTACAACTCCTCTGACACTATCTACAACATCAGGAATACCATCTACAACTAGTATAACTCCTGGCACAACTAGTTCCATATTTACAACAACTTATAGTACAAAAACTCATCTGACACCATCTACAACATCAGAAATACAATCTACAACTAGTACAACTCCTGGTACAACTAGTTCAACATATACAACCACTTATAGCACTATAACTCCTCTGATGCCATCTACAACATCAGAAATCTTATCTACAACTAGTACAACTCCTGGCACAACTACTTCAACTTTTAGAACTACAACTCATCTGACACCATCAACAACATCTAAAATACCATCTAAATCTAGTACAACTCTTGGAACACCAACTTCAACATTTACTACCACATTCATTACTACTACTCCACTGACACCATCTACAACATCGGAAATGTCATCTACAACTTCTAGCCGTACAGCTACTTCCAAATCTACTCTAACTGTTGTTACTGGAAACACCAAATCTACCACTTATGCATCTGCAAAACCTCAAATTGACAATACCACAACCTCACTATTTACATCTACAACTACACCTGTGTCTACAGAAATAACTTCTTCAAATAGTACAACTTCTGGCACAACACCTACTTCAACATTTACCCCCACCTCCACTTCTACAACTCCTATGACGCTATCTACAACATCAGAAATAGCAACTACAACTATTACAACTCCTGGTACAACACCTACTTCCAGAGCCACAACCACTAGATCTCCTATAACTACACTACTTACAACAACACCTTTTATACCTCCAACACCACCACAACCAAACCCATGTTATGAATGTATAAACATAAATGGAAGTTTCATCCCTGTTCAACGGGATTGTCTTCCACCGCAAAACATCACCTGTGAAAATCACCAGCCAAGCGTGCTGCTAGAGGATAAGCACGAATGCTGCCCTTATTACGTCTGTGATT
Seq A exon
GTAAGTATGCTGTACTTCTCAAGCACTACATTTTAGAATTTAATCAGTGTAATGATATCTATGCTGATGTCCTCATTTCTGCTGTACACTTAGAAGAATGAATACAGTAGCAGAACCTATTACTCTACATGCTGTTCCAAATATTTATAAAGGACATAATAAAGACAGAGATATCTGAAAGTGTCTGTCTCTTTGAATCCATCGGTCACAGTGGATTAGATCCTAAAATTTTATTCAAATGTAATTGGCAAAAAAAAAAAAAAAGTAATCTATACTCCAGTAAATTAAAACAAAAAGGTCTTCTGGAGCAATAAAATGGTAAAACAAAATGGTATTATGTTTTTCTGAACATCAGCATATTGTAAAGTTTTTTCAAAATATATTTTATGTTCATCTGAAATAAACTATAAATAATAGTAATACTTACTAAGAAAATCATTTCATAAATTAAAAGGCTATTTACCATATTTGTAGTTATTCTAACCAATATGCATTGACCTAAAGACAAACATTTTTTTTTACAAATTAATATTAAAAATCTATACAGAGAATATGGATATGTTAAAATGTCTGTCTAATGACAACTGGAATAATTTTTAACAATAAATGTTCTAATAAATTTTTGTGCTTGGTTCCTAACCTATACACACTCTACTATTCATAG
Seq C2 exon
GCTTTTGCCAAGGCTGGGGTGACTCCCATTACATCACATTTGATGGACTCTATTACAATTACCAAGGAAACTGCACTTATATTTTAATGAAGGAAATTAGCCCTCAATTCAATTTAGCAATCTACATTGAGAATGTCTACTGTGACCCTGCTGAGAATGTATCCTGTCCCAGATCCCTTATTGTGTCTTACAACAAACAAAACATTACACTTAGAAGTCACAGGCTAATGGGAGGAGCAAATCTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078994:ENSDART00000154598:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.856 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(51.6=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACGGGATTGTCTTCCACCG
R:
TTGCTCCTCCCATTAGCCTGT
Band lengths:
343-1007
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]