GgaINT0058510 @ galGal3
Intron Retention
Description
NA
Coordinates
chr5:16019778-16020782:-
Coord C1 exon
chr5:16020591-16020782
Coord A exon
chr5:16020026-16020590
Coord C2 exon
chr5:16019778-16020025
Length
565 bp
Sequences
Splice sites
5' ss Seq
ATTGTAAGT
5' ss Score
8.54
3' ss Seq
CTGGCTTTATGTTTTTGCAGGCT
3' ss Score
8.63
Exon sequences
Seq C1 exon
CCTCTTTCCAAATACAGCCGGGTGAGTCATGGTGGCTGTGTAACTGCACCAATGCTATATGTGTAGAAAACAATACTGTTGTGATCGTTCCAGTAATCTGTGAGCCACCTCCTAAACCCACCTGCTCCAATGGGCTTGCTCCTGTGCAAGTCATTGATGATGATCTATGCTGTTGGCATTGGGAGTGTGATT
Seq A exon
GTAAGTATATTATTCTGTGTAATATTTTATTTCCTGTGGGAAAAGTACAACTGTAAACAGTCAGCACTGTTTATTGGGGACAGATATTGTGCAAGATGTGCTCTAAGACTTTGAGTGTTGGTCTGTTTAGAGTGCTTCATTGGTTCTTTTTAGGTAACTGGGAGATTTTACGTTGATTTCCATCCTTTTTGCATAGCTGTTTTGCTAGTAGAACAAATCATTCTAAGATAGATTTTAAATGTCTAGATGCAGACTTCTATTGACTACAAATCTGCATATAAGTTAGTTGTTTCGGCAGTCTGTAAAAGTACTTCTAGGGCATGATTAGTCCCATTCTCTGTTGTCATTCAGAAATAAGTTAGATAAACAGTGCCTTGCAAATCCCTGGATTTTTCTCTATTATTGATAAGTTCTACAAAAGTGCTCGTGCATTGACATATATACTTTAAATATTTAAAGTCTTAAAGTTAGAGTAGATGAATTGCACACCTACCGATTTTATTTGTAGTCTGATCGGATTCTGGATGTTACCATAAGTAGCTAACCTGGCTTTATGTTTTTGCAG
Seq C2 exon
GCTACTGCACTGGCTGGGGAGACCCACATTATATGACGTTTGATGGACTGTACTACAGCTATCAAGGGAATTGCACATATGTTCTTGTGGAAGAGATTGAAAAAAGAGTTGACAACTTTGGTGTCTACATTGATAACTACCATTGTGATGCACGGGATATAGTTTCCTGTCCACGAGCACTCATTGTGAGACATGAGACTCAGGAAGTGCGCATTGTAACAGTGAAACCAAATACCCTGGAAGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006744:ENSGALT00000010869:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.3=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGGTGGCTGTGTAACTGC
R:
CACAATGAGTGCTCGTGGACA
Band lengths:
354-919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]