HsaINT0106750 @ hg38
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7512]
Coordinates
chr11:1101756-1102664:+
Coord C1 exon
chr11:1101756-1101930
Coord A exon
chr11:1101931-1102416
Coord C2 exon
chr11:1102417-1102664
Length
486 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCACTCCGGCTCCCTTGCAGGCT
3' ss Score
9.01
Exon sequences
Seq C1 exon
GAGAACGAGACTTGGTGGCTGTGCGACTGCTTCATGGCCACGTGCAAGTACAACAACACGGTGGAGATCGTGAAGGTGGAGTGTGAGCCGCCGCCCATGCCCACCTGCTCCAACGGCCTCCAACCCGTGCGCGTCGAGGACCCCGACGGCTGCTGCTGGCACTGGGAGTGCGACT
Seq A exon
GTGAGTCCGGGGCCCCCAGGCCCTCCCCGCATCTCCTGCCCTCTCCGTGGGTGGGGGCTGCAGGGCCCGTCTCCCGGGGGCGGAAGGGCTGAGGCTCCTTGGGCACAGATCCCACTGAGGTGTTCGCTGAGGCTGGGTGACTTCTGAGGGTCTTCTCACAGCCCTGCTTTTGCCTCATTGGGTGGGGAGGGCCTGGGCAGGTGGAGGGCTTGCCTGGTGGAGTTAGGGCTCCTCCCTGGAACAAGGGTGCTTCTGAGGCAAGAGGGGGCTGAGTTGAAGTTTGAACCCTGGTCCGTCCTGCAGAATGGGCCACTGTGGGTGCGCCAGGGCAAGTGCAGCTCAGACATCCCCGTGCCCACGCACAGGAGTGGGGTTTTCAGGCCCCAGCTTCCTGCTGGCTCTTCCTGACTATGCCCCAGCCCAGCCCTTGCACCCGACCCCGGCCGAGGGGCACAGGTGGCACGGCTCACTCCGGCTCCCTTGCAG
Seq C2 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGCCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788:ENST00000361558:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACACGGTGGAGATCGT
R:
CACGGTCTTGATCAGCACCTC
Band lengths:
349-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development