DreINT0014873 @ danRer10
Intron Retention
Gene
ENSDARG00000104499 | MUC5B (2 of 3)
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr25:8161532-8162019:+
Coord C1 exon
chr25:8161532-8161685
Coord A exon
chr25:8161686-8161780
Coord C2 exon
chr25:8161781-8162019
Length
95 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
CCTGTTTCTTGAGCTAACAGGTT
3' ss Score
2.31
Exon sequences
Seq C1 exon
ACAGACGCATGCACTATCAAAACATGCAAAAATGGAACAGTCACATCAAATCATGTGCAATGTGACCCAGTTGTAGTTCCTAAATGTGTCAACGGCCTTGGACCTGTGAAGGTGTATTATAACAACCGGTGCTGCTATAAATATGAGTGTGACT
Seq A exon
GTGAGTTTATTTTGTTCAATTCAATCTTAAAAGTACCAAAATTACATTGTTTTTGGCAGTGCCTTATATTTAACTCCTGTTTCTTGAGCTAACAG
Seq C2 exon
GTTTGTGCAAGGCATATGGCGACCCTCATTATCGATCTTTTGATGGACAATATTATACTTTTCATGGAAACTGCACTTATGTGTTGATGGAAGAAATCATCCCAACGTACAATATCAGTGTTCATCTTAAGAACTATTATTGTGATGTTGTGAAACGTATTGCATGCACCCAGTATGCAATTGTTTATTACAACTCTTACAAAATCCTGCTGAACAGCACTGATGATAAAGTGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104499:ENSDART00000164115:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATGCACTATCAAAACATGC
R:
CGCCATATGCCTTGCACAAAC
Band lengths:
171-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]