MmuINT0102349 @ mm10
Intron Retention
Gene
ENSMUSG00000025515 | Muc2
Description
mucin 2 [Source:MGI Symbol;Acc:MGI:1339364]
Coordinates
chr7:141745972-141746865:+
Coord C1 exon
chr7:141745972-141746146
Coord A exon
chr7:141746147-141746617
Coord C2 exon
chr7:141746618-141746865
Length
471 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
3' ss Seq
TTATGGAACTTTTCCCACAGGCT
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTTAATGAGACCTGGTGGCTGTGTAACTGTACTATGGCTATTTGCAATCATGACAACGTAGTGGAGATTGTGCCGCTGAAGTGCGATCCCCCACCCATGCCCACCTGTGCCAATGGCCTCAAACCTGTGCGTGTTCCTGATGCTGATAACTGCTGCTGGCACTGGGAATGTGACT
Seq A exon
GTAAGGCCTTTAGCTATCTGGGGGATCCACCTTTCTTCTTTGTATTGGTGGTTGCAAGGGCAGCCTCTTGGGGACAGACCTTAATTGTTAAGCACCTGCTGAAGGCTAGGCACATAGTCTTAGGTATTTCCCAACACCCTTTATGTTTCTGAGTAGGAGCCTGGGCAGGTAGAAGCCTTGCCTGGTGGAGCAAGGCATGTTTCAGAGCAAGGATGCTTCTGAGGATGGGATTGACCTGGCTTTAAAGCAAGGACTCACTCTGCAGAAGGAGATCTCTGGACCAAATGGGAAGATGCTTTTGGAAGATCTGCTCCAGCTTGGATGTCATTAGTGGCTCAATCTAGGGACTGGGTCTTTTAAGACTTCTTTAATTATTGATAGTTTTTTATAGCCTATCCCTTGAATCCTGACAATGACTTGATTCCAGTGGTTCTGGCTCAGTGATGTCAATTTATGGAACTTTTCCCACAG
Seq C2 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTCTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTGGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGTGATGCCAATGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCGCCACGAGACCCAGGAAGTACAGATCAAGACCGTGAGGATGATGCCCATTGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025515:ENSMUST00000187945:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.3=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTAGTGGAGATTGTGCCG
R:
GGCATCATCCTCACGGTCTTG
Band lengths:
356-827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types