HsaINT0106750 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1095664-1096572:+
Coord C1 exon
chr11:1095664-1095838
Coord A exon
chr11:1095839-1096324
Coord C2 exon
chr11:1096325-1096572
Length
486 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCACTCCGGCTCCCTTGCAGGCT
3' ss Score
9.01
Exon sequences
Seq C1 exon
GAGAACGAGACTTGGTGGCTGTGCGACTGCTTCATGGCCACGTGCAAGTACAACAACACGGTGGAGATCGTGAAGGTGGAGTGTGAGCCGCCGCCCATGCCCACCTGCTCCAACGGCCTCCAACCCGTGCGCGTCGAGGACCCCGACGGCTGCTGCTGGCACTGGGAGTGCGACT
Seq A exon
GTGAGTCCGGGGCCCCCAGGCCCTCCCCGCATCTCCTGCCCTCTCCGTGGGTGGGGGCTGCAGGGCCCGTCTCCCGGGGGCGGAAGGGCTGAGGCTCCTTGGGCACAGATCCCACTGAGGTGTTCGCTGAGGCTGGGTGACTTCTGAGGGTCTTCTCACAGCCCTGCTTTTGCCTCATTGGGTGGGGAGGGCCTGGGCAGGTGGAGGGCTTGCCTGGTGGAGTTAGGGCTCCTCCCTGGAACAAGGGTGCTTCTGAGGCAAGAGGGGGCTGAGTTGAAGTTTGAACCCTGGTCCGTCCTGCAGAATGGGCCACTGTGGGTGCGCCAGGGCAAGTGCAGCTCAGACATCCCCGTGCCCACGCACAGGAGTGGGGTTTTCAGGCCCCAGCTTCCTGCTGGCTCTTCCTGACTATGCCCCAGCCCAGCCCTTGCACCCGACCCCGGCCGAGGGGCACAGGTGGCACGGCTCACTCCGGCTCCCTTGCAG
Seq C2 exon
GCTACTGCACGGGCTGGGGCGACCCGCACTATGTCACCTTCGACGGACTCTACTACAGCTACCAGGGCAACTGCACCTACGTGCTGGTGGAGGAGATCAGCCCCTCCGTGGACAACTTCGGAGTTTACATCGACAACTACCACTGCGATCCCAACGACAAGGTGTCCTGTCCCCGCACCCTCATCGTGCGCCACGAGACCCAGGAGGTGCTGATCAAGACCGTGCATATGATGCCCATGCAGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:34
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(52.3=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAACACGGTGGAGATCGT
R:
CACGGTCTTGATCAGCACCTC
Band lengths:
349-835
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)