RnoINT0000849 @ rn6
Intron Retention
Gene
ENSRNOG00000046602 | AABR07006030.1
Description
NA
Coordinates
chr1:214684371-214685258:+
Coord C1 exon
chr1:214684371-214684545
Coord A exon
chr1:214684546-214685010
Coord C2 exon
chr1:214685011-214685258
Length
465 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGG
5' ss Score
5.19
3' ss Seq
TTATGGACCTTTTTCCACAGGCT
3' ss Score
9
Exon sequences
Seq C1 exon
GTCAATGAGACCTGGTGGCTGTGTAACTGTACCATGGCCATCTGCAAATATGACAACGTAGTGGAGATTGTGGAGCTGGAGTGCAACCCCCCACCCATGCCCACCTGTTCCAATGGCCTCAAACCCGTGCGTGTCCCTGACCCTGATGGCTGCTGCTGGCACTGGGAATGTGACT
Seq A exon
GTAAGGCCTTTAGCTACCTGGGATGTACCTGCCAGGGTCCTTTCTTCTTTGGTATTGGTGGCTACGGGGCCAGCCTCCTGGGAGCAGACTTTAATTGCTAAGCACCTGCTGAAGGCTGGGTGTACAGTCTTAGGTACTTCCCAACACCCTTTATGTTTATGAGTAGGAGCCTGGGCAGGTAGAAGCCTTGTCTGGTGGAGCAAAGCATGTTTCAGAGCAAGGATGCTTTTGAGGGTGGGGTTGCCCTGGCCCCTAAGCAAGGACTCACCCTGCAGAAGGAGGTCTCTGGACCAAATGGGAAGCTGCTTTTGGAAGATCTGCTCCAGCTTGCCCCTGCAGGGTTTATTTTTTTTAAGACTCCTTTAATGATTGATAGTTTTTCTAGCCTATTTCTTGAATCCTGACAATGACTTGATTCCGGTGGTTCTGGCTTGGTGACATCAATTTATGGACCTTTTTCCACAG
Seq C2 exon
GCTACTGCACTGGCTGGGGGGACCCACACTTTGTCACCTTCGATGGGCTTTACTACAGTTACCAGGGTAACTGTACCTATGTGCTGGTAGAGGAGATTACCCCCACAGTGGACAACTTTGGGGTCTACATTGACAACTACCACTGCGATGCCAACGACAAGGTGTCCTGCCCCCGCACACTTATTGTGCACCATGAGACCCAGGAAGTGCTGATCAAGACTGTGCACATGATGCCCATTGAGGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046602:ENSRNOT00000075002:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.3=96.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATTGTGGAGCTGGAGTGC
R:
CCACCTCAATGGGCATCATGT
Band lengths:
358-823
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]