MmuINT0102473 @ mm9
Intron Retention
Gene
ENSMUSG00000066108 | Muc5b
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149051880-149052917:+
Coord C1 exon
chr7:149051880-149052048
Coord A exon
chr7:149052049-149052660
Coord C2 exon
chr7:149052661-149052917
Length
612 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGC
5' ss Score
5.2
3' ss Seq
CCAACTGTAATCTCCCATAGGCT
3' ss Score
8.33
Exon sequences
Seq C1 exon
GTGAATGAGTCTTGGACCCTGGAGAACTGCACAGTGGCCAGGTGCCAGGGCAACAATCAAATCATTCTCCTTGAGCCGGAGCCTGTGGACAATGTCACCTGTGCCAACCGTCACTTGCCTATCAAAGTGTGGGACCAGGAGCCTTGCCACTTCCACTACGAGTGTGAAT
Seq A exon
GTGAGCAGAGGGCAGGCATGGGGCAGCTCAGCAAGGTGGGACAGCACCAAGGCATCTGACCTCAGCGTCTGTCAATCTCAGACAGCATGTGCACACACACAGGAGGTGTAGAACATGGATGTGACACAGGCAGGGGCTGTAACCAGAGAGAGGCAGGGTGGCACTGATGACAACTTCCATTACTGGATGATAAACGACTCAAGTTTGGGACTTAGAACTGAAAACTCTTAGGGTCTCCCATCCCCAAGCTAGAGCCAGATCAAATCATGCAAGGCCACACTCCCTATGGAGGCTGGGGAGAGTCCTTCCTGCCTTTGCAGGTTAAGGGCTACGGGAGTCCTTGGCTTGTGGCTTCATTGCTTCATTCGGCCTCCATCTTCTTATGACCTGCTCCATGTCTCTCTATCACTTATAAGTACACTGTCAGTAGGTTCAAGGGACACCTAGGTAACTTGGAATGGTCCCATTTTAAGACCAATATATTCACAATAACTATAGTTTGGGAGACACCTATTTTATAGATGTAGCAACTGTTCCCTTGAGGTACTAGTTCCTGAGGTGGCACTGGGTAACATGGTTGGGGAGTGAGTCTCCAACTGTAATCTCCCATAG
Seq C2 exon
GCTTCTGCAGTGGATGGGGGCACTCACACTACCTGACCTTCGATGGCACCTCCTATACTTTCCTGGATAACTGTACCTCCGTGCTCATGAGAGAGATCCACCCTCGCCATGGTAACCTGAGCATCCTTGCCCACAGCTACTACTGTGGGGCTACCACAAATGTCACCTCCTGTCCCCGTGCCCTCAGTGTGTACTACAACTCCATGGAGATTATCCTTACCATCAGCACCACTGAGAGCGGGAAGGATGAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:33
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(50.9=96.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCTGTGGACAATGTCACC
R:
TCTCATCCTTCCCGCTCTCAG
Band lengths:
343-955
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: