DreINT0099054 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8309313-8309814:+
Coord C1 exon
chr25:8309313-8309487
Coord A exon
chr25:8309488-8309578
Coord C2 exon
chr25:8309579-8309814
Length
91 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
CCTGTTCCTTGGTTTGAAAGGTA
3' ss Score
7.81
Exon sequences
Seq C1 exon
AATATGGAGTCCTGGATTGAAAACTGCAAAAACTACACGTGTAAAAATGGCAAGGTAACCTCAGTGCCTCTACAGTGTGACAAATCTGACAAGGTCATGCCTACATGTACCAATGGAATTAAAGCTAAGAAGGTGTCTTATAACAATGGCTGCTGCTCTAGATATGAATGCGAAT
Seq A exon
GTGAGTTTAAACCATGCTTATTTACATTAAATTTATCTTTAATACTTATGAGTAAATGTTAAATAACATGCCCTGTTCCTTGGTTTGAAAG
Seq C2 exon
GTAAATGCAGTGGTTGGGGTGACCCACATTACCAAATGTTTGATGGAACATACTATGACTTCCAAGGAAATTGCACTTACGTCTTGTTCAAAGAAATCGTCCCAAGATATAACATCAGTGCCTATGTTAAAAACTACTTATGTGATCTTCAAAATAATCTTGCCTGCCCAGAGTATGTGATTGTGAACTACAAATCATATAGCATTAAGCTGACAAGCAACACCAAAGAGATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009420=VWD=PU(49.0=96.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCAAGGTAACCTCAGTGC
R:
CATTTGGTAATGTGGGTCACCC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]