Special

MmuINT0102489 @ mm9

Intron Retention

Gene
Description
mucin 5, subtype B, tracheobronchial [Source:MGI Symbol;Acc:MGI:1921430]
Coordinates
chr7:149057629-149058990:+
Coord C1 exon
chr7:149057629-149057737
Coord A exon
chr7:149057738-149058285
Coord C2 exon
chr7:149058286-149058990
Length
548 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
GCACCCTCCCATGTCCACAGGTA
3' ss Score
10.33
Exon sequences
Seq C1 exon
ACTCAAGTACCTGTCAAGTGCACGTAAATGCGACTGTCTTGCGGTATAAGGGCTGTGAGACAGAGGTCAACATCACCTTCTGCGAGGGTTCCTGCTCTGGAATATCCAA
Seq A exon
GTGAGTACCTAACCTCCCATGAGAGTACAGCAAAACTAGTTGCTACTTGTCACCTTGGGTCTCACAGAGACTGTCCCCTGCTTAGGGTCAGGAGGTCACATATAGCTCTCTGCACAAAATAGGGGTTTGGTTGGGGACTCATGGGCAGGAATCTGAATATGTGTAAGGGATCAGGCAGTATTGGATCCCTCTGTTAGCCCTAGATGGCCCTAGATGGCCCCAGGCTGTGGTCGGCTGTGAAGAGGGAGTGTCCAAGAAGTGTCCAGTGAGAGTCTGTAGTTAAAGAGGGCAGGAAAAATGGCCAGAGGTTCACTTCAGGGCTTAGGGTGGCTTTCCAGAGGGAACATCTGTACAGGATCAGCAGAATGGAAGGGGAATAGAAGCACAGAAGGCTATGAGAGATGGAGTAGGGTTTAAAGAGAGTCCAGGAGGGCTAAGGCTTTATGTTTAAGAAAGCAGCCATGCTGGACAGTCAAGCGGCTGTCAAGAGCCCACAGAGAACCATGAATGATTCTACTGCTAAGAGGAGCACCCTCCCATGTCCACAG
Seq C2 exon
GTACTCCATGGAGGCCCAGGCCATGGAACGCCAGTGCACCTGCTGTCAGGAGAGCAAGGTCCATGATGTAGCTGTAACTATGCAGTGTCCTGATGGTACAGTCATCCAGCACACCTATACCCACATCGATGAGTGCAACTGTGCCCCGGCCTGCAGCTCCCTGCCTGGGACTTCCATGATTGCTTCCTAGAGCCCATTGCTAGAAGGCAATTGCATCCCTAACCCCTTATGTCCCTCCACCTGGGGCAGAACCTGCACAACTGACCATGAGAACCTTAGGCAGGCAAGCTCCCCGAGGCCCACAAGAACCCTCTGTGGCCCTCACTGCCTCTGCTCCACCCTCCGCCTGCCACTGTTAAGACCAGCATCAAAGAGGGTGGTGGGGCAATCAAGATCCACTTGAGGAGGGTTCCAGGTGAGGATCTGGCCCTGAGGAGCCTGTTGGCTGTTTTGGCCTCATTCTCTGTGAGAGCCTGTGGCTGTTAAGGCTCCCCACAGCAAGCCTGTGTGTCCTCTGTCACATAAAACAAGCCCTGTGTCAGGCATCTCATGCTCACAAAAGCAGATGGGACTGTCCAAGCAAGATCAGCTACCAGGGATCTGTATCAGGCAAGGTGGCTGCCTGCTGGAGGGGCTCTGGGATCTGGGGTTGAAGAGGGGTCTGTGCTCACTCATCCCTAAGCTGCAATAAACCCTGGCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066108-Muc5b:NM_028801:48
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0000717=Cys_knot=PU(36.1=94.6)
A:
NA
C2:
PF0000717=Cys_knot=PD(62.9=95.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATGCGACTGTCTTGCGGTA
R:
TGGTCAGTTGTGCAGGTTCTG
Band lengths:
351-899
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types