MmuINT0102512 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148830109-148830630:-
Coord C1 exon
chr7:148830474-148830630
Coord A exon
chr7:148830253-148830473
Coord C2 exon
chr7:148830109-148830252
Length
221 bp
Sequences
Splice sites
5' ss Seq
GCCGTGAGT
5' ss Score
8.56
3' ss Seq
ATGTGCATCCTTCCTCTCAGCCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GTATACCACCTGCCCTACTATGAGGCCTGCGTGCGTGACGCCTGTGGGTGTGACACGGGCGGGGACTGCGAGTGTCTGTGTGATGCAGTGGCTGCCTATGCCAAAGCCTGTCTGGACAAGGGCGTGTGTGTGGACTGGAGAACCCCAGACTTCTGCC
Seq A exon
GTGAGTGTCTCACCCCATGCCCAAAACTGTTCCACCTAGGGAATTACCCCAGAAGCCTCTCCAGGCAGGAACCAGGCTGTACCCCTGCAGGGCAACCTTGGGTAACCAGCTATTCCCCAGCCTCTCCCCTCCCAGACCCAAGAGGAGGCCTCCAGAGACCCCAAGCCCTTCATACTGGCACGGAGGCCTTAATGCCTACTGATGTGCATCCTTCCTCTCAG
Seq C2 exon
CCATCTACTGTGACTTCTACAACACCCACACATTGGTGGGTGAGAATGAATACCAGTATGCTCAGGAGTCCAACTGCACGTGGCACTACCAGCCCTGTCTCTGCCCTGGCAGCCTGGGAAGCTTCCCGGACACCAACACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACCTGCCCTACTATGAGG
R:
TTCTGTGTTGGTGTCCGGGAA
Band lengths:
296-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: