DreINT0099049 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8296705-8297260:+
Coord C1 exon
chr25:8296705-8296861
Coord A exon
chr25:8296862-8297131
Coord C2 exon
chr25:8297132-8297260
Length
270 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TTGTGTTGTCATTTTTGCAGCTT
3' ss Score
8.7
Exon sequences
Seq C1 exon
GTGGACTCTGGCCCATATTATGATGCCTGTGTTCGGGACACCTGTGCATGTGACAGCGGGGGTGACTGCGATTGTCTCTGTACTGCAGTGGGGGCTTACGCTGCTGAATGCCGTAAGAGAGGAGCTTGTGTAGCATGGCGAACACCACACTTTTGCC
Seq A exon
GTAAGTCCAAAACTTATAAATATATACTTGCCTAAATACCTACACTGAAGCCTTTGAATCTTAGGTCAGAAATGTATTTATTGAACTTGTGCCCGCAAGTTATGTTATGTTATTGCTTGACCTTTATTAAAATTTTAATAATCTGCAAGTATATATATATATATATATATATATATATATATATATATATATATATTTATACACACCCTCTGGCCACTTAGACGCTTAAAGACGCTTAATTAACCCTATCTTGTGTTGTCATTTTTGCAG
Seq C2 exon
CTTTATTTTGTGACTACTACAATGCTCCAGGAGAATGTCAGTGGCACTATAAAACCTGTGGATCAACCTGCATGAAAACCTGTAGAAACCCCTTAGGAACCTGCTCTGATCAAATTCCTCCCCTTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=FE(69.3=100)
A:
NA
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=PU(55.9=75.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACTCTGGCCCATATTATGA
R:
TCAAGGGGAGGAATTTGATCAGA
Band lengths:
284-554
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]