MmuINT0102520 @ mm9
Intron Retention
Gene
ENSMUSG00000048191 | Muc6
Description
mucin 6, gastric [Source:MGI Symbol;Acc:MGI:2663233]
Coordinates
chr7:148820339-148825729:-
Coord C1 exon
chr7:148822182-148825729
Coord A exon
chr7:148820442-148822181
Coord C2 exon
chr7:148820339-148820441
Length
1740 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
TCTTGGGCCTCCATCCTCAGGGA
3' ss Score
8.39
Exon sequences
Seq C1 exon
GGGTCTAACTGGTACTCCACCGGTCCACACCACCTCAGGCACAACTAGCAGTCCTCAGACTCCACGCACCACACACCCTTTCTCCACTGTTGCTGTCTCCAACACAAAACATACCACAGGTGTCTCCTTGGAAACATCTGTGCAGACCACCATTGCCTCCCCTACACCATCAGCTCCTCAGACCTCGTTGGCCACACACCTTCCCTTTTCTTCAACCTCCTCTGTGACACCAACTTCTGAGGTAATTATCACCCCAACACCCCAACACACACTTTCATCAGCCTCTACCTCCACAACCACGGGAAACATTCTTCCAACCACCATAGGACAAACTGGGTCTCCTCATACATCCGTACCTGTCATTTATACAACCAGTGCCATCACTCAAACCAAAACCTCATTCTCCACAGACAGGACATCCACCCCCACCTCAGCCCCACACCTCTCAGAAACTTCTGCAGTGACTGCCCATCAATCTACACCAACTGCAGTTAGTGCCAACTCAATTAAGCCAACCATGAGTTCAACTGGCACACCTGTGGTCCACACCACCTCAGGAACAACTAGCAGTCCTCAGACTCCACGCACCACACACCCTTCAACCACTGTGGCTGTGTCTGGGACAGTACACACCACAGGTCTCCCCTCAGGAACATCCGTGCACACCACCACCAACTTCCCAACCCATTCAGGTCCTCAGAGCTCACTGTCCACCCATCTCCCATTATTTTCAACCTTATCTGTGACACCAACCACTGAGGGACTTAACACCCCAACCAGCCCACACTCCCTATCAGTGGCCTCTACCTCCATGCCACTGATGACTGTCCTTCCAACCACCCTGGAAGGCACAAGACCACCTCATACATCAGTACCTGTCACGTATACAACCACTGCTGCCACACAAACCAAAAGCTCGTTCTCCACAGACAGGACCTCTGCACCCCATCTCTCGCAACCTTCCACAGTGACTCCCACACAATCAACACCAATTCCAGCTACTACCAACTCACTTATGACCACTGGGGGTCTAACTGGTACTCCTCCGGTCCACACCACCTCAGGCACAACTAGCAGTCCTCAGACTCCACGCACCACACACCCTTTCTCCACTGTTGCTGTCTCCAACACAACACATACCACAGGTGTCTCCTTGGAAACATCTGTGCAGACCACCATTGCCTCCCCTACACCATCAGCTCCTCAGACCTCGTTGGCCACACACCTTCCCTTTTCTTCAACCTCCTCTGTGACACCAACTTCTGAGGTAATTATCACCCCAACACCCCAACACACACTTTCATCAGCCTCTACCTCCACAACCACGGGAAACATTCTTCCAACCACCATAGGAAAAACTGGGTCTCCTCATACATCCGTACCTGTCATTTATACAACCAGTGCCATCACTCAAACCAAAACCTCATTCTCCACAGACAGGACATCCACCTCCACCTCAGCCCCACACCTCTCAGAAACTTCTGCAGTCACTGCCCATCAATCTACACCAACTGCAGTTAGTGCCAACTCAATTAAGCCAACCATGAGTTCAACTGGCACACCTGTGGTCCACACCACCTCAGGAACAACTAGCAGTCCTCAGACTCCACGCACCACACACCCTTCAACCACTGTGGCTGTGTCTGGGACAGTACACACCACAGGTCTCCCCTCAGGAACATCCGTGCACACCACCACCAACTTCCCAACCCATTCAGGTCCTCAGAGCTCACTGTCCACCCATCTCCCATTATTTTCAACCTTATCTGTGACACCAACTACTGAGGGACTTAACACCCCCACCAGCCCACATTCCCTATCAGCGGCCTCTACCTCCATGCCACTGATGACTGTCCTTCCAACCACCCTGGAAGGCACAAGACCACCTCATACATCAGTACCTGTCACATATACAACCACTGCTGCCACACAAACCAAAAGCTCGTTCTCCACAGACAGGACCTCTACACCCCATCTCTCGCAATCTTCCACTGTGACTCCCACACAACCAACACCAATTCCAGCTACTACCAACTCACCTATGACCACTGTGGGTCTAACTGGTACCCCAGTGGTCCACACCCCCTCAGGCACATCTAGCATCGCCCATACTCCACACACCACACACTCTCTACCCACAGCGGCTTCCTCCAGCACCACACTTAGCACAGCTCCTCAATTCAGAACATCTGAGCAGTCCACCACCACCTTCCCAACACCATCAGCTCCTCAGACCTCTTTAGTCACATCACTGCCACCATTCTCAACTTCCTCTGTGTCACCAACTGACGAGATACACATCACCTCAACTAACCCACACACAGTCTCCTCAGTTTCCATGTCTAGGCCAGTGAGCACTATACTTCAAACCACAATAGAAGTGACAACACCTCCAAATACATCCACACCTGTCACTCACTCAACCAGTGCCACAACTGAAGCTCAAGGCTCTTTCTCCACAGAGAGAACCTCTACTTCCTACCTTTCTCACCCTTCCTCCACGACAGTCCATCAATCCACAGCAGGTCCTGTAATCACTTCAATCAAGTCCACCATGGGTGTAACTGGTACTCCACCGGTCCACACCACCTCAGGCACAACTAGCAGTCCTCAGACTCCACACAGCACACACCCTATATCCACTGCTGCCATCTCTAGGACAACAGGCATCTCAGGCACCCCGTTTCGAACACCGATGAAGACCACGATTACCTTCCCAACACCATCCAGCCTTCAGACTTCTATGGCCACATTATTTCCACCATTTTCAACTTCTGTTATGTCAAGTACTGAGATATTTAACACCCCAACCAATCCACATTCAGTCTCATCAGCTTCCACATCTAGACCACTGAGCACTAGTCTTCCAACTACAATCAAAGGCACTGGGACTCCACAAACACCAGTATCCGACATTAACACAACCAGTGCCACTACCCAAGCTCACAGCTCTTTTCCCACAACCAGAACATCTACTTCCCACCTTTCCTTGCCTTCCTCCATGACATCCACTCTCACACCTGCTTCAAGATCTGCTTCAACTCTGCAGTACACACCCACTCCCAGCTCAGTGTCCCATTCCCCACTGCTTACTACACCCACAGCATCACCTCCTTCATCTGCCCCTACCTTTGTGTCTCCAACTGCTGCCTCAACTGTTATTTCCTCTGCTCTCCCTACCATCCACATGACTCCCACCCCATCGAGTAGGCCAACCTCCAGCACTGGCCTTCTCTCCACTTCCAAGACTACATCTCACGTGCCCACATTTTCTTCATTCTCCTCGAAGTCTACCACCGCCCATCTTACCTCCCTCACTACCCAAGCTGCTACATCAGGGCTACTGTCTTCAACCATGGGCATGACAAACCTGCCAAGTTCAGGCTCCCCAGACATCAACCATACCACTAGGCCTCCAGGTAGTAGCCCACTGCCCACATCTGCCTTCCTGAGCCGCAGCACTTCTCCCACTGGAAGCTCCTCACCTTCTACCCCAGTATCATCCTCCAATCCAGACTCCTCGGTCTCCTCGCCACCCTCGCATCCTG
Seq A exon
GTAAGTAATGTGACAGGCTGGGTCCTTGGTCCCTAGCCTCCTTATGTCCCATTTGTTTACTCCCCAGGATTTTACACAGCAGCTCTGCTGTGTAGTTCTTCCCTCCCATGGTCCCACAGTGCCTGTGCAGGCCCTAGAGCTTCTTTTTGGTGTTTTTGGGCCTAAGTGCAAGCTTCTTTCTCTTCACCTCTCAGGAGTACTACTCTGTTCACCTAGTCTAGCTGAATTAGAGACTTAAAAGTCCGTTTGACTTTCCTGGCCCTCTACTGCTTCCTGTAAGGGATTCACTTGTGCCCCATATGCCTGCTGTGGTCTTGACTTACCTTGGCCCTAACATCTCTAAGCAGCCCTCCACACCTGTTGAAAAGCTTGCATCTGAGGTCTAGCTGGGTCTTTGAGTGTAGGCACTCAAACTACCTCAGTACTAAAGGAAATGATCGCCTACTCCAGGCATACAGTTCATCTCAGATGATGTGTGCAAGAGGCAGGGTGGGGGTGGGGGTGGGGGTGAATGGGTGAGGTGGAGGCCAGGCCAGGCATGGAAGTTAGTATGGACACTTGTTGCCCATGGTTTCCATAAGCTCTCCTACCCAACTCTAACCAGGGCTCCCTACAGGACAGTTATCCCCTGCACAGTGACATGAATTCAACATGTACTCTGAGGACACCCTCAAAGCACATAACTTGGGACCAGGCTCCCCACACAAGCTCTAGGCCTCCCTCATACAGGAAGTCTTCACAAAGCCAGCAATCAGTTCTGTTTTTGGTTACGTCTTGTTACTTTAAGTTCAGGCTGTTTACTGAGAAAATAGTCTCAAGAAGTAAGGAGAGAAAGTAGTGTTACAGGATAGGAAGAAATCACCAAACCTTCCACCAAAAACCCCTTAGAGAAGCAGGCCAGGAATAAACTTGGACACAGGAGAGAAGATACATGGGCACATCTGTCACCCACATATCCTTTTTTTTTTTTTGTTTTATTTTGATTTTGTAATTGTTTCTCAAGACAGGGTTTCTGTCCTGGAACTTGCTTTGTAGACTAGGCTGCCCTTGAACTCACAAGCAACTCACCTACCTCTGCCTCCCAGGGGATAAAAGCTGTATGCACCATGCCTGGCTCACAAACCATTTTTAACTTAATGTATGTGTTGTGCATACAACTTGCATGTGAGTTCTAGAGATGAAAAGGTCATTAGGTTTGGTGGCAAGCCCCTTTACCTGTTGACCCATCTTACTCAACCCAAGTTCCACGTGGACGGTATCAACCCAGGCTCTTCCTGACTCCTGGTCTTCCTGCATGTCTCCTGAGGGCGGGCTGATTATAGGTGTGTACCATCTCACCCTGACCACACTGCAGAGCCTAAGGTCAACAGTACAGCCTGCTTGCTGAAGCATCACTACCATTTGCTGTCCAGTGTCGTGGCCTCTGAAACCTTTCTAGAGGCCCAGAGGAAGTGGCCTTCTCTGCTGTGCCTCTTACCCCAGGTGGCACAATTCTGCTTCTCCGATACTCTATGTTCTCTTGTGAGGGATATGGACAGTCTCCTGTGATACCCTCCTTGGCTCTTAGTATGTCCTCCATCCAACAGGCCTAAGACACCTTTACTGGGGACTATAGGGGGCTGACTCAGTGACAGAGCCTTTAAGAAGGCTTTGAATACTGGATGGATAAGGAGCTACATAGGACAAGTCAGATGGGGACTAGGAAGTGACTGAGACCTGTTCTTGGGCCTCCATCCTCAG
Seq C2 exon
GGACCTGCAGCTTACAGGAGGAAGAGCACCAGATTACTTACCAGGGCTGTGTGGCCAATGTGACTCTAACTCGTTGCCAGGGTTTCTGCGCCTCCTCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048191-Muc6:NM_181729:32
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=NA C2=0.171
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCTACCACCGCCCATCTT
R:
CAGAAACCCTGGCAACGAGTT
Band lengths:
350-2090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: