MmuINT0102572 @ mm10
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121857336-121861276:+
Coord C1 exon
chr6:121857336-121857497
Coord A exon
chr6:121857498-121861048
Coord C2 exon
chr6:121861049-121861276
Length
3551 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCATTTTGTTGTTTTTCCAGGTC
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTCCGCCTAGTGGATATCAAGGGAGACCCTATCCCAAATGAGAAAGTCTTCATCAAAGCACAAGAACTTAGCTATACCAGTGCTACTACCACTGATCAGCATGGCCTGGCAGAGTTCTCCATAGATACCACATGCATCTCGGGCTCTTCCCTCCATATCAAA
Seq A exon
GTAAGTAAGAAATGAGGAGGACAAAAGACAAAAGGCAAGGCTTTGCAACAGCTTGAACTCAATAATGTGTAGCCTAATGAAAAAAAAAAATCATGCCAAACTCTCTTATTTTAGGGAAAAACACAAAAAGGTTCTGATTATTAATAAAAGTATGAGCATACATTGCAAACACATTTTAACACAATTTTTATTTTATTGTATCTTTTGCTTTATTTATGTTTTCAATACCTAGTTAGGACCTTCATGTAAAACAATGATTAAAGTTCCATTTTTATCTATATAGACAAGGATAGGTGCTGTGCATCCTCAAATTCTTACTTCTGTGGGACAGCAACATCTTCACACTTTGAATCTTATCAGGGTTCCAGAGGCATGAAAGTTGTGGCAAGAATTTTTAAATTTTTCTCTACCACTCATTACCCTTAATAATAATTTTCCATTATCTCTAATACCTGGTATTTTTCTTCCTTTGTATCTAAACTATTAGTGAAATCTTCCACATAACTTTATTTAGATTACTGCTCTGTTTATTTCTCAGATTTCAATTTTTAATAGTTATTTTGCCAGTCGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAAGCAGAGTCTGGCAGATTTCCCGAGTTTGAGAACAGCCTTGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACGAAAAAAAAAATTGTTTCACAATTTTTGTTTTCTGATTTTTGGGTAAAATATATAATCTCTTATTTACTCCACTGGGAAGTGTGTATGTGTGTGTCCCCAATTTTGTCAATAATTTTTAAGATTAAACATGTAATATTATTTACATAATATTTCATATGCTTCAATAGCTTTGAGTTCAGATATAGGAAAATTAAGAGATTTATGATAAGTCATGTTTTTTTCATATTTCACCCATTTTGATGTTTTAATTTGTACATCTTTAGTGATAGCTATAGAACATCTGGTATTATAAGAAAATTTTCAGGATGAGTAGCTCTCTTTTAAAGGCAAATCCAAGGAACATCGAAAAAATTCAGTAAATTCATCAACAACAAAGCAAGTCAGATGTATGAATATAATTTAAAATATTAAAAACAGCCACTATACCCCCAGTTCCAGTGAATACAAAGTGGAAAATACAATGTAACTTAAACAGTTACGTTAAAACATAGAGAGAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAACCGACTGCTCTCCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATCAGTAAATAAATCTTAAATAAAACTTATGAGTTTAAAAAAACATAGAGAGAAGCTTTATTACTAAAGTAGCAGAAAAGGAAGTCTGAGAAAAAGAAAAAAGAATTTAGTACAGTCTACAAGGAATGAAATTCTGCACTAGTAATCATATAAATATCAAATTAATAATATAGCTTATTCTGTAACTCAATTTGTTAGCACCACTAGGACAGGCCAAATTCAAAGGAAGTAAATAATAAATATGGGAGAATTAATCATGGAGACCAAAGGGAACAGTAAAAAGGTCCAGAGAAACCATCGTTGATTCTGAAATTACAAAGACAAGTGAAATTGATTAGCCCTCATCTAAACCCAAAGAGAGTTAAAACCCAAATTAACGAATTAGAGGTGGCTATTACAGCACACACTGTGAAATCCATAGGTTTCTTACAGAATAATCTGAAAATGTTCATTACAATAAATATAAAAATCCAGAATAGATAAACGATTTTCTGGATATTTATATTCTACCAAACGTGAGCCAAAAGGATGTGAAAAACCTCAATGGATTGGCAATGAGAAATAGAATTGAAAAAATAATTGAAGAGACCTGGCACAATAAAATCTGAGACTGGGAAGAACACATTATTGCATAGAACCACACTTCAAAAAGGAAATATTGTTGTATAAAGATTCAAAAACGAGGAATGCTTCCAAAGCTGTGCTATGAATCTAGAATAAACCTGAGACCAAAAGCAGATGAAGATACAGTGAAAAGAACTCTTCAGACTAATTTACCAATGAATGTTAAGAGAAAGACCACACTGAAATTCTTACATGCCAAATTCAACCACACATTAAGCAAATCATATACCATGATAAAACTGACTTTGTACTAAGAATACATGGATGGTTTCACATTTGTATGCTGACAACTGTAAAATAGCATATAAATAGAATCAAGAGTTAAAAACCACATGGTCATCTCAGTAGATCCAACAAATAGTCTGTTTTCAAGACACCAGTTACAAAAGGTCAGGAAACACACAAAGATGCTCAACACATATGGATCTCAATAAACTGCAGGTTATGAAAGCAAAAGAACCTATATGCACAGCAGGTGTGACATTAAATTAGTATGACGATTAAGCTCAGAGATTCAACAAAACTCCAAAGTAAAACCAGTATAGAATACAGGTATGTGACGCCCATATACAAGCCCATATGAATCAAAGTTAAATATAATAGAGACATCTACATCCCTGTGGCAGTCTCAGCAGTTCTCAACAGTGTTGAGAAAAGGAGCCAATTTTAATGCCTATTGGTGGATTACAGAGAATCTCTTGGGTAATTTATGGGAGCATCACCTGTCAATAAAATGCCATTAGCATATTATCTTTGGCAGGAAACAGGGAGGTGAAAGTTCAGGTATAGAGAGAATTTCTTGGATTAGAGTTAGGTGTGAGAGATTTGCCCCAAACTGAGAGGTAACCAACAGAAAAGAATAAACAGGATAATTGAATAATTCATTCTTGCAGTCATACTTTTATGAACTTGGGCACATGGGGGAAATGCCAGTTACATGAGTGGATAGAGAAAATTGGAAATATGTGCACATTGGACTTTTATTGAGATATTTATAAGAGAGTCATCTTGTCTATAGAGAAATGAATGGATTTGTAGATTGTCATTATAACAAAAGAGTATGAGACTAGGAGAAATTATCTGTATAAGTCCCTCATATGCGGAACCTAGGGAAACAGAGGAATGAAAGCAGAGAGGGTCCATTAAGGAAGAAGGGAGCCAGCAGGAGACATAGGATTTCATTGTGAGTTGGATGAAGATTCTCAGAGTACACTACATTAATATATGAAAATATTTCTGTTAAACCATTATTTTGTACATTCATTATTCAATAAAATTTATATCTGTAAATTTTTTATTATATATTAGATGCACAATAAATGGTTCCTTTGTCTCATAAAAATAATGCATTTCCTTTTTTCCTCTTCCCTGGTATAAATATTTGCTTCGATTGTGAAAATTCAGGGTGTTAGACATCAATCCATTTAATGAAATTCCCTCCATTTTTAATAAGATGTACAAAATACTCAATCATTAAATGAAATGGGAAAATCCACGGATTAATCACAGAAGAGATATTCTGTCTGCTAGGCAATCTGCAGCATAGCATTTTGTTGTTTTTCCAG
Seq C2 exon
GTCAACCACAAAGAGGAAGATTCATGTTCCTATTTCTATTGCATGGAGGAAAGACATGCAAGTGCAAAGCATGTGGCCTATGCTGTTTACTCCCTCAGCAAGAGCTACATCTACCTTGACACAGAGACCAGCAGCATCTTGCCCTGCAACCAGATTCACACAGTTCAGGCACATTTTATTCTGAAGGGGGACTTGGGAGTGCTGAAAGAGCTCATTTTCTACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908:ENSMUST00000032228:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF077039=A2M_N_2=PU(25.8=51.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types