MmuINT0102572 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121807354-121811294:+
Coord C1 exon
chr6:121807354-121807515
Coord A exon
chr6:121807516-121811066
Coord C2 exon
chr6:121811067-121811294
Length
3551 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
3' ss Seq
GCATTTTGTTGTTTTTCCAGGTC
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTCCGCCTAGTGGATATCAAGGGAGACCCTATCCCAAATGAGAAAGTCTTCATCAAAGCACAAGAACTTAGCTATACCAGTGCTACTACCACTGATCAGCATGGCCTGGCAGAGTTCTCCATAGATACCACATGCATCTCGGGCTCTTCCCTCCATATCAAA
Seq A exon
GTAAGTAAGAAATGAGGAGGACAAAAGACAAAAGGCAAGGCTTTGCAACAGCTTGAACTCAATAATGTGTAGCCTAATGAAAAAAAAAAATCATGCCAAACTCTCTTATTTTAGGGAAAAACACAAAAAGGTTCTGATTATTAATAAAAGTATGAGCATACATTGCAAACACATTTTAACACAATTTTTATTTTATTGTATCTTTTGCTTTATTTATGTTTTCAATACCTAGTTAGGACCTTCATGTAAAACAATGATTAAAGTTCCATTTTTATCTATATAGACAAGGATAGGTGCTGTGCATCCTCAAATTCTTACTTCTGTGGGACAGCAACATCTTCACACTTTGAATCTTATCAGGGTTCCAGAGGCATGAAAGTTGTGGCAAGAATTTTTAAATTTTTCTCTACCACTCATTACCCTTAATAATAATTTTCCATTATCTCTAATACCTGGTATTTTTCTTCCTTTGTATCTAAACTATTAGTGAAATCTTCCACATAACTTTATTTAGATTACTGCTCTGTTTATTTCTCAGATTTCAATTTTTAATAGTTATTTTGCCAGTCGTGGTGGCACATGCCTTTAATCCCAGCACTTGGGAAGCAGAGTCTGGCAGATTTCCCGAGTTTGAGAACAGCCTTGTCTACAAAGTGAGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAACGAAAAAAAAAATTGTTTCACAATTTTTGTTTTCTGATTTTTGGGTAAAATATATAATCTCTTATTTACTCCACTGGGAAGTGTGTATGTGTGTGTCCCCAATTTTGTCAATAATTTTTAAGATTAAACATGTAATATTATTTACATAATATTTCATATGCTTCAATAGCTTTGAGTTCAGATATAGGAAAATTAAGAGATTTATGATAAGTCATGTTTTTTTCATATTTCACCCATTTTGATGTTTTAATTTGTACATCTTTAGTGATAGCTATAGAACATCTGGTATTATAAGAAAATTTTCAGGATGAGTAGCTCTCTTTTAAAGGCAAATCCAAGGAACATCGAAAAAATTCAGTAAATTCATCAACAACAAAGCAAGTCAGATGTATGAATATAATTTAAAATATTAAAAACAGCCACTATACCCCCAGTTCCAGTGAATACAAAGTGGAAAATACAATGTAACTTAAACAGTTACGTTAAAACATAGAGAGAAGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCAACCGACTGCTCTCCCAAAGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTAAGGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTACTTACATATAATCAGTAAATAAATCTTAAATAAAACTTATGAGTTTAAAAAAACATAGAGAGAAGCTTTATTACTAAAGTAGCAGAAAAGGAAGTCTGAGAAAAAGAAAAAAGAATTTAGTACAGTCTACAAGGAATGAAATTCTGCACTAGTAATCATATAAATATCAAATTAATAATATAGCTTATTCTGTAACTCAATTTGTTAGCACCACTAGGACAGGCCAAATTCAAAGGAAGTAAATAATAAATATGGGAGAATTAATCATGGAGACCAAAGGGAACAGTAAAAAGGTCCAGAGAAACCATCGTTGATTCTGAAATTACAAAGACAAGTGAAATTGATTAGCCCTCATCTAAACCCAAAGAGAGTTAAAACCCAAATTAACGAATTAGAGGTGGCTATTACAGCACACACTGTGAAATCCATAGGTTTCTTACAGAATAATCTGAAAATGTTCATTACAATAAATATAAAAATCCAGAATAGATAAACGATTTTCTGGATATTTATATTCTACCAAACGTGAGCCAAAAGGATGTGAAAAACCTCAATGGATTGGCAATGAGAAATAGAATTGAAAAAATAATTGAAGAGACCTGGCACAATAAAATCTGAGACTGGGAAGAACACATTATTGCATAGAACCACACTTCAAAAAGGAAATATTGTTGTATAAAGATTCAAAAACGAGGAATGCTTCCAAAGCTGTGCTATGAATCTAGAATAAACCTGAGACCAAAAGCAGATGAAGATACAGTGAAAAGAACTCTTCAGACTAATTTACCAATGAATGTTAAGAGAAAGACCACACTGAAATTCTTACATGCCAAATTCAACCACACATTAAGCAAATCATATACCATGATAAAACTGACTTTGTACTAAGAATACATGGATGGTTTCACATTTGTATGCTGACAACTGTAAAATAGCATATAAATAGAATCAAGAGTTAAAAACCACATGGTCATCTCAGTAGATCCAACAAATAGTCTGTTTTCAAGACACCAGTTACAAAAGGTCAGGAAACACACAAAGATGCTCAACACATATGGATCTCAATAAACTGCAGGTTATGAAAGCAAAAGAACCTATATGCACAGCAGGTGTGACATTAAATTAGTATGACGATTAAGCTCAGAGATTCAACAAAACTCCAAAGTAAAACCAGTATAGAATACAGGTATGTGACGCCCATATACAAGCCCATATGAATCAAAGTTAAATATAATAGAGACATCTACATCCCTGTGGCAGTCTCAGCAGTTCTCAACAGTGTTGAGAAAAGGAGCCAATTTTAATGCCTATTGGTGGATTACAGAGAATCTCTTGGGTAATTTATGGGAGCATCACCTGTCAATAAAATGCCATTAGCATATTATCTTTGGCAGGAAACAGGGAGGTGAAAGTTCAGGTATAGAGAGAATTTCTTGGATTAGAGTTAGGTGTGAGAGATTTGCCCCAAACTGAGAGGTAACCAACAGAAAAGAATAAACAGGATAATTGAATAATTCATTCTTGCAGTCATACTTTTATGAACTTGGGCACATGGGGGAAATGCCAGTTACATGAGTGGATAGAGAAAATTGGAAATATGTGCACATTGGACTTTTATTGAGATATTTATAAGAGAGTCATCTTGTCTATAGAGAAATGAATGGATTTGTAGATTGTCATTATAACAAAAGAGTATGAGACTAGGAGAAATTATCTGTATAAGTCCCTCATATGCGGAACCTAGGGAAACAGAGGAATGAAAGCAGAGAGGGTCCATTAAGGAAGAAGGGAGCCAGCAGGAGACATAGGATTTCATTGTGAGTTGGATGAAGATTCTCAGAGTACACTACATTAATATATGAAAATATTTCTGTTAAACCATTATTTTGTACATTCATTATTCAATAAAATTTATATCTGTAAATTTTTTATTATATATTAGATGCACAATAAATGGTTCCTTTGTCTCATAAAAATAATGCATTTCCTTTTTTCCTCTTCCCTGGTATAAATATTTGCTTCGATTGTGAAAATTCAGGGTGTTAGACATCAATCCATTTAATGAAATTCCCTCCATTTTTAATAAGATGTACAAAATACTCAATCATTAAATGAAATGGGAAAATCCACGGATTAATCACAGAAGAGATATTCTGTCTGCTAGGCAATCTGCAGCATAGCATTTTGTTGTTTTTCCAG
Seq C2 exon
GTCAACCACAAAGAGGAAGATTCATGTTCCTATTTCTATTGCATGGAGGAAAGACATGCAAGTGCAAAGCATGTGGCCTATGCTGTTTACTCCCTCAGCAAGAGCTACATCTACCTTGACACAGAGACCAGCAGCATCTTGCCCTGCAACCAGATTCACACAGTTCAGGCACATTTTATTCTGAAGGGGGACTTGGGAGTGCTGAAAGAGCTCATTTTCTACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0236911=Big_1=FE(77.9=100)
A:
NA
C2:
PF0236911=Big_1=PD(10.3=9.2),PF077039=A2M_N_2=PU(25.8=51.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: