MmuINT0102580 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121824410-121825574:+
Coord C1 exon
chr6:121824410-121824638
Coord A exon
chr6:121824639-121825447
Coord C2 exon
chr6:121825448-121825574
Length
809 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTTCCCTGTTGGGCCACAGATG
3' ss Score
8.85
Exon sequences
Seq C1 exon
CTCCACAGGACTGGCTGAAGTGGAAATGACTGTCCCTGACACCATCACTGAATGGAAGGCAGGAGCTCTCTGCTTGTCCAATGACACTGGCCTTGGCCTCTCTTCTGTGGTACCTCTCCAAGCCTTCAAGCCCTTCTTTGTGGAGGTCTCATTGCCCTATTCTGTGGTCCGTGGAGAAGCCTTCATGCTCAAGGCCACTGTGATGAACTATCTCCCCACAAGCATGCAG
Seq A exon
GTAAACACCTTTCTGAATTCAGCATGACCAGAGGGTAAGACAGCAAATAGTGTGTGTAGATTATAGCTAAGACTTAAATGAAAAGAATAAGCAAAGAGGGGAAGAGATTATACTGGACCTGTCAGCAAGTAGTACCAAATGTTTAAACAATTCCCATACTCTAACTTCATATACACAGAGCAAAGAGTTGTTTAACAATATGAACATGACATAAAATTATGTGGTTTTGCCAGTATTTAAACAGCACATACTGTACTAACAGAGAGAGGATATTGCATGTAGCCTCTGTATATAATCAAAAGACATGGTCCATATATACGTATGAGGTTGTTGTCAGGATAAAATGTTATATTGTTTTACAGTGAATTTTTCTTTCATAGAGGGAGATGTATACTTAAAAATGTTAGTTAAAAATCTAGTACATTAATGTGCTTCTGCAATCAAAATAAAACAAATATAAGTAGACAGATATATAATTATCCCCTTAATGGTTTGTGTCGATAATACATAGCTGATAGCTAAAAAACACTATAGAAATGCATGTGCGAAAGACATCTTTGCAAGCCTTCTGTGTGAACTTACATGACATTTTAGGCATGTTTTCCAAACACATCCCCTCTCTTCTATTTCTAACACAAATCCCCATAAGACTTTGGCTTACCTACTACCATGCATAACATGCTGTCCTTCCATGGCGACATCTTTCTTTTCTTTTCTTTTCTATTCTTTTTTTTTTTTTTTTTGTCAATACAACCTTTTATTTGCTAATTTATTCATTTTGCTGCTTCTTTTTCCCTGTTGGGCCACAG
Seq C2 exon
ATGAGTGTGCAGCTGGAAGCCTCTCCTGATTTCACAGCTGTCCCAGTGGGAGACGACCAAGATTCTTACTGCCTCAGTGCCAATGGGAGGCACACCTCATCCTGGCTGGTAACTCCCAAGTCTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020717=A2M=FE(83.5=100)
A:
NA
C2:
PF0020717=A2M=PD(4.4=9.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGACTGGCTGAAGTGGAA
R:
TTGGGAGTTACCAGCCAGGAT
Band lengths:
344-1153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: