MmuINT0102592 @ mm10
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121841002-121841324:+
Coord C1 exon
chr6:121841002-121841161
Coord A exon
chr6:121841162-121841271
Coord C2 exon
chr6:121841272-121841324
Length
110 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CTCTCTCTCTCTTTGTCCAGTTA
3' ss Score
9.55
Exon sequences
Seq C1 exon
ATCCCTAGACTCTCCTCTTCTGATGAGGAGGATTTTCTCTACGTGGACATCAAAGGGCCAACCCACGAATTCAGCAAAAGGAAAGCAGTGCTTGTGAAGAACAAAGAAAGTGTTGTCTTTGTGCAGACAGATAAGCCCGTGTACAAGCCAGGACAATCAG
Seq A exon
GTATGAAGCTCCACTGTGGGTAAACAAATTAAGACACCATCCTGAACATGGCAAGAAGGGCTGTGTCTGTGGACCTCACTAGTAAATTCTCTCTCTCTCTCTTTGTCCAG
Seq C2 exon
TTAAATTTCGGGTTGTCTCTATGGATAAAATGCTACGTCCCCTGAATGAGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908:ENSMUST00000032228:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0183514=A2M_N=PU(17.0=29.6)
A:
NA
C2:
PF0183514=A2M_N=FE(18.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTAGACTCTCCTCTTCTGA
R:
ACTCATTCAGGGGACGTAGCA
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types